Click here to switch to the map view.

The map label for this gene is smpA [H]

Identifier: 71892319

GI number: 71892319

Start: 676582

End: 676920

Strand: Direct

Name: smpA [H]

Synonym: BPEN_566

Alternate gene names: 71892319

Gene position: 676582-676920 (Clockwise)

Preceding gene: 71892318

Following gene: 71892321

Centisome position: 85.46

GC content: 28.32

Gene sequence:

>339_bases
ATGTATTTGAAAGTATTTTTTAAAACCTTACATACCAGTATTTTTATTATAACGCTGGTATGTAACGTAAGTTGTACTAT
GCCGCAATATATGCCGATATCCTTTGATATTAAGCAAGGCAATCGTTTAAATGAATATGATATTAAAAAGATTCGTCTTG
GCATGACAAAACTAGAAATATCTTCTAATATCGGAGATCCGACGTTAGAAGGGTTTTTAAACCCAAACACATGGTATTAT
ATTTTTTATTATCGTAGAGGTAATAGAATATTAGAGCATCAAATTTTAACATTAAAATTTGATGCTCATGATATTTTGGT
AACTATAAACAAAGAGTAA

Upstream 100 bases:

>100_bases
AATAATATTGTATTGATAATTACAACAAAAAAGATAATAGTTGTAATTAAACAATAATATATTTTACATTGTATTTGAAA
AGTAGATTAAGCAGAAAATT

Downstream 100 bases:

>100_bases
TAATACCCTTACGTGTTTTTGTTTTTGTGTTATAATATGCGATACGTTCCGTATATTACATGAGCCCTGGAAATGAAGGC
TGTAATTATGTTTTTATATT

Product: small membrane protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MYLKVFFKTLHTSIFIITLVCNVSCTMPQYMPISFDIKQGNRLNEYDIKKIRLGMTKLEISSNIGDPTLEGFLNPNTWYY
IFYYRRGNRILEHQILTLKFDAHDILVTINKE

Sequences:

>Translated_112_residues
MYLKVFFKTLHTSIFIITLVCNVSCTMPQYMPISFDIKQGNRLNEYDIKKIRLGMTKLEISSNIGDPTLEGFLNPNTWYY
IFYYRRGNRILEHQILTLKFDAHDILVTINKE
>Mature_112_residues
MYLKVFFKTLHTSIFIITLVCNVSCTMPQYMPISFDIKQGNRLNEYDIKKIRLGMTKLEISSNIGDPTLEGFLNPNTWYY
IFYYRRGNRILEHQILTLKFDAHDILVTINKE

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=105, Percent_Identity=32.3809523809524, Blast_Score=69, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 13273; Mature: 13273

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLKVFFKTLHTSIFIITLVCNVSCTMPQYMPISFDIKQGNRLNEYDIKKIRLGMTKLEI
CCCEEEHHHHHHHHEEEEEEECCEECCCCCCCEEEEECCCCCCCCCCCEEEEECEEEEEE
SSNIGDPTLEGFLNPNTWYYIFYYRRGNRILEHQILTLKFDAHDILVTINKE
CCCCCCCCCCCEECCCEEEEEEEEECCCEEEEEEEEEEEECCCEEEEEEECC
>Mature Secondary Structure
MYLKVFFKTLHTSIFIITLVCNVSCTMPQYMPISFDIKQGNRLNEYDIKKIRLGMTKLEI
CCCEEEHHHHHHHHEEEEEEECCEECCCCCCCEEEEECCCCCCCCCCCEEEEECEEEEEE
SSNIGDPTLEGFLNPNTWYYIFYYRRGNRILEHQILTLKFDAHDILVTINKE
CCCCCCCCCCCEECCCEEEEEEEEECCCEEEEEEEEEEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]