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The map label for this gene is yciR [C]

Identifier: 66045947

GI number: 66045947

Start: 3291984

End: 3293954

Strand: Reverse

Name: yciR [C]

Synonym: Psyr_2711

Alternate gene names: 66045947

Gene position: 3293954-3291984 (Counterclockwise)

Preceding gene: 66045948

Following gene: 66045946

Centisome position: 54.06

GC content: 58.6

Gene sequence:

>1971_bases
ATGCTGAAAAAACTACCGGGTGCCTTGCGTGCCCTGATGTCTGTGCCTGCTGATAACCCCAGGTTGTTGCAGGCCCAGTA
CGTTGCGTTGTCCCGACAACTGCCGTTGATGTACTTCGTGCTGCTGGTCAATACCTGGGCGTTGGCGTTCACTCATTGGC
GAACCGCTCCGGTGTGGCTGACGCTGCTGGTCCCTGCGCTGCTCACGGTTATCTGTGGCGTCCGTGCAAGCAAATGGTTG
CGCACTGTAAACCGGCCGCCACCCGCTCCGGCGATCATTCTGGCCACGCTGCGCGGTACGCATGGTCTGGCGGGCGTGAT
AGCGGCCGGGTTTGCCGCCTGGTCCCTGTCGCTTTACCCCTATGGCGATGCCTATTCCCAGGCGCATGTCGCGTTTTTTA
TGGGCATTACGGTGATTGTCTGCATCTTCTGCATGATGCACTTGCGGCCCGCAGCGCTGACCACCGCGCTGGTCGTCAAC
ACCGCCTTCGTGATTTTCTTCGCCTCGACTTACAACATTACCTTTATCGCCACGGCGGTGAATATCGTGCTGGTGTCGAT
CGGCATGCTGATCATTCTTCATTACCAGTACCGCGATTTCACCAGTCTGGTGAATGTGCAGGTAAAGACCGAGCAACTGA
GCAACGAGAACCTGCTGCTGGCCAATCAGGACAGCCTGACGGGCCTGCCCAATCGTCGGCAGTTCTTTCAGACTTTGGAT
ACCGCGATGACCGAGGCAATGGCGCAGCGCAGCGGGCTGGCAGTGGGCGTGTTGGACCTGGACGGGTTCAAGCCGGTCAA
TGACCTTTATGGTCATCGAATCGGCGACCGTCTGCTGATGCTGGTGGCTGAACGCCTGACCAGCGCCTCAAGCGACAAGG
TGCATGTATCGCGACTGGGCGGTGACGAGTTCGCGCTGGTGATCAAGGGAGACATCGACAGCGAGGCATTGCAGGCGTTT
GGCAAACACCTGTGTGACCTCATGCACGAAAGCTTCGAACTGTCGGACATGCCGATCCAGATTGGCGCGACACTGGGCCT
GGCGACGTACCCGGCTACCGCAGATAACGCGACCCAGCTGTTCGAATTTGCCGATTACGCGCTGTATCAGGGCAAAAACC
ATAACCCCGGAACCACCTGCCTGTTCTCCGCTAGCCACCGTGAGCAGTTGCATGCCGACGGCGTTACCGAACAGGCCTTG
CGGCGCGCCAATCTGGAAACCGAGTTCCACGTATTGTTTCAGCCGATCATTGAAAGCTGCACGCGCGAAACGGTGGCGTT
CGAGGCGCTGGCGCGCTGGAACAGCCCGGAACTGGGGGCTGTTTCGCCGGCGCATTTCATTCCGATCGCCGAGCGCATCG
GCATGATCAACAAGCTCACTGTGCCCTTGTTGACCCAGGCGCTAAGCATGGCCCTATCGTGGCCTGCGCCTGTCAGGCTG
TCGTTCAATCTGTCCGCGCACGACTGTGCGACCTGGGAAAGTGTCAACAGAATTGTCGAGATCATCGAACACAGCGGCTT
CGATGCGTCGCGGCTCGATCTGGAAATCACCGAAACGGCGGTCATGCAGGATATCGCCCAGGTGCAGCAGGCCATTACCC
AGTTCCGCAAGCTGGGTTGCGGCATCTCGCTGGACGACTTCGGCACCGGCTTCTCCAGCCTCAGTCAACTGCACGCGCTG
GCGCTGACCAAGCTGAAGATCGACCGCAGCTTTGTCACCGGGGTGCATAACAACCCGGCCAGTTACAAGATCGTCAAATC
GCTGGTTGCCTTGAGTCTGGACATGTCGCTGGGTTGCGTGATCGAAGGCGTCGAAACACAGGATGAGTTGAATGCATTGA
CCACCCTGGGTTGTACGATGGTGCAGGGTTACTTCTACAGCCCGCCGATCAGTTTTGCAGAGACGCTGGCATGGATTGAA
ATACCCGATGAAGAGCGCACCTTCGGTTACGCCGCTTCGTGCCCCCTCTGA

Upstream 100 bases:

>100_bases
TGCCGAGAGCCTGACAAGCGAGCCGACAATTAGCTGTCCGGTTCGCATGATGAGCAGCAAGCCACGTGTGCTTTGACTGT
GGTAACAGAGAAGCCTTGCG

Downstream 100 bases:

>100_bases
TCGATTGCATGTGGGCGATTCACTCGGGCGCGCGTGGGGTAAGATGCCTTTTTTGATCCCCACGGAAGCCTTTGATGAGC
AAACCCGGGCAGACCGTCCT

Product: GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 656; Mature: 656

Protein sequence:

>656_residues
MLKKLPGALRALMSVPADNPRLLQAQYVALSRQLPLMYFVLLVNTWALAFTHWRTAPVWLTLLVPALLTVICGVRASKWL
RTVNRPPPAPAIILATLRGTHGLAGVIAAGFAAWSLSLYPYGDAYSQAHVAFFMGITVIVCIFCMMHLRPAALTTALVVN
TAFVIFFASTYNITFIATAVNIVLVSIGMLIILHYQYRDFTSLVNVQVKTEQLSNENLLLANQDSLTGLPNRRQFFQTLD
TAMTEAMAQRSGLAVGVLDLDGFKPVNDLYGHRIGDRLLMLVAERLTSASSDKVHVSRLGGDEFALVIKGDIDSEALQAF
GKHLCDLMHESFELSDMPIQIGATLGLATYPATADNATQLFEFADYALYQGKNHNPGTTCLFSASHREQLHADGVTEQAL
RRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGAVSPAHFIPIAERIGMINKLTVPLLTQALSMALSWPAPVRL
SFNLSAHDCATWESVNRIVEIIEHSGFDASRLDLEITETAVMQDIAQVQQAITQFRKLGCGISLDDFGTGFSSLSQLHAL
ALTKLKIDRSFVTGVHNNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTTLGCTMVQGYFYSPPISFAETLAWIE
IPDEERTFGYAASCPL

Sequences:

>Translated_656_residues
MLKKLPGALRALMSVPADNPRLLQAQYVALSRQLPLMYFVLLVNTWALAFTHWRTAPVWLTLLVPALLTVICGVRASKWL
RTVNRPPPAPAIILATLRGTHGLAGVIAAGFAAWSLSLYPYGDAYSQAHVAFFMGITVIVCIFCMMHLRPAALTTALVVN
TAFVIFFASTYNITFIATAVNIVLVSIGMLIILHYQYRDFTSLVNVQVKTEQLSNENLLLANQDSLTGLPNRRQFFQTLD
TAMTEAMAQRSGLAVGVLDLDGFKPVNDLYGHRIGDRLLMLVAERLTSASSDKVHVSRLGGDEFALVIKGDIDSEALQAF
GKHLCDLMHESFELSDMPIQIGATLGLATYPATADNATQLFEFADYALYQGKNHNPGTTCLFSASHREQLHADGVTEQAL
RRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGAVSPAHFIPIAERIGMINKLTVPLLTQALSMALSWPAPVRL
SFNLSAHDCATWESVNRIVEIIEHSGFDASRLDLEITETAVMQDIAQVQQAITQFRKLGCGISLDDFGTGFSSLSQLHAL
ALTKLKIDRSFVTGVHNNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTTLGCTMVQGYFYSPPISFAETLAWIE
IPDEERTFGYAASCPL
>Mature_656_residues
MLKKLPGALRALMSVPADNPRLLQAQYVALSRQLPLMYFVLLVNTWALAFTHWRTAPVWLTLLVPALLTVICGVRASKWL
RTVNRPPPAPAIILATLRGTHGLAGVIAAGFAAWSLSLYPYGDAYSQAHVAFFMGITVIVCIFCMMHLRPAALTTALVVN
TAFVIFFASTYNITFIATAVNIVLVSIGMLIILHYQYRDFTSLVNVQVKTEQLSNENLLLANQDSLTGLPNRRQFFQTLD
TAMTEAMAQRSGLAVGVLDLDGFKPVNDLYGHRIGDRLLMLVAERLTSASSDKVHVSRLGGDEFALVIKGDIDSEALQAF
GKHLCDLMHESFELSDMPIQIGATLGLATYPATADNATQLFEFADYALYQGKNHNPGTTCLFSASHREQLHADGVTEQAL
RRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGAVSPAHFIPIAERIGMINKLTVPLLTQALSMALSWPAPVRL
SFNLSAHDCATWESVNRIVEIIEHSGFDASRLDLEITETAVMQDIAQVQQAITQFRKLGCGISLDDFGTGFSSLSQLHAL
ALTKLKIDRSFVTGVHNNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTTLGCTMVQGYFYSPPISFAETLAWIE
IPDEERTFGYAASCPL

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=31.8501170960187, Blast_Score=220, Evalue=2e-58,
Organism=Escherichia coli, GI87081921, Length=425, Percent_Identity=29.8823529411765, Blast_Score=186, Evalue=4e-48,
Organism=Escherichia coli, GI1787055, Length=530, Percent_Identity=24.3396226415094, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI1790496, Length=260, Percent_Identity=33.0769230769231, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI87081845, Length=247, Percent_Identity=33.1983805668016, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1786507, Length=255, Percent_Identity=30.1960784313725, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI226510982, Length=423, Percent_Identity=22.4586288416076, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI1788849, Length=429, Percent_Identity=25.1748251748252, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI1788502, Length=339, Percent_Identity=26.2536873156342, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI87081980, Length=245, Percent_Identity=28.5714285714286, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87081743, Length=233, Percent_Identity=31.3304721030043, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI87082096, Length=512, Percent_Identity=23.046875, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI87081977, Length=172, Percent_Identity=34.8837209302326, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1788956, Length=186, Percent_Identity=36.0215053763441, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=35.9756097560976, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787262, Length=157, Percent_Identity=30.5732484076433, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=32.4175824175824, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788381, Length=424, Percent_Identity=22.6415094339623, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787802, Length=244, Percent_Identity=26.2295081967213, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786584, Length=242, Percent_Identity=22.7272727272727, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787410, Length=236, Percent_Identity=23.3050847457627, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=30.9090909090909, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=28.9156626506024, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=26.4705882352941, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 71945; Mature: 71945

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS50883 EAL ; PS50887 GGDEF ; PS00289 PENTAXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKLPGALRALMSVPADNPRLLQAQYVALSRQLPLMYFVLLVNTWALAFTHWRTAPVWL
CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHH
TLLVPALLTVICGVRASKWLRTVNRPPPAPAIILATLRGTHGLAGVIAAGFAAWSLSLYP
HHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHEEEEEE
YGDAYSQAHVAFFMGITVIVCIFCMMHLRPAALTTALVVNTAFVIFFASTYNITFIATAV
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCEEHHHHHH
NIVLVSIGMLIILHYQYRDFTSLVNVQVKTEQLSNENLLLANQDSLTGLPNRRQFFQTLD
HHHHHHHHHHHHEEHHHHHHHHHHEEEEEHHHCCCCCEEEECCCCCCCCCCHHHHHHHHH
TAMTEAMAQRSGLAVGVLDLDGFKPVNDLYGHRIGDRLLMLVAERLTSASSDKVHVSRLG
HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
GDEFALVIKGDIDSEALQAFGKHLCDLMHESFELSDMPIQIGATLGLATYPATADNATQL
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEECEEECCCCCCCHHHH
FEFADYALYQGKNHNPGTTCLFSASHREQLHADGVTEQALRRANLETEFHVLFQPIIESC
HHHHHHHHHCCCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
TRETVAFEALARWNSPELGAVSPAHFIPIAERIGMINKLTVPLLTQALSMALSWPAPVRL
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEE
SFNLSAHDCATWESVNRIVEIIEHSGFDASRLDLEITETAVMQDIAQVQQAITQFRKLGC
EEECCCCCHHHHHHHHHHHHHHHHCCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHCC
GISLDDFGTGFSSLSQLHALALTKLKIDRSFVTGVHNNPASYKIVKSLVALSLDMSLGCV
CCCHHHCCCCHHHHHHHHHHHHHHHEECHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEE
IEGVETQDELNALTTLGCTMVQGYFYSPPISFAETLAWIEIPDEERTFGYAASCPL
EECCCCHHHHHHHHHHHHHHHCCEECCCCHHHHHHEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKKLPGALRALMSVPADNPRLLQAQYVALSRQLPLMYFVLLVNTWALAFTHWRTAPVWL
CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHH
TLLVPALLTVICGVRASKWLRTVNRPPPAPAIILATLRGTHGLAGVIAAGFAAWSLSLYP
HHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHEEEEEE
YGDAYSQAHVAFFMGITVIVCIFCMMHLRPAALTTALVVNTAFVIFFASTYNITFIATAV
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCEEHHHHHH
NIVLVSIGMLIILHYQYRDFTSLVNVQVKTEQLSNENLLLANQDSLTGLPNRRQFFQTLD
HHHHHHHHHHHHEEHHHHHHHHHHEEEEEHHHCCCCCEEEECCCCCCCCCCHHHHHHHHH
TAMTEAMAQRSGLAVGVLDLDGFKPVNDLYGHRIGDRLLMLVAERLTSASSDKVHVSRLG
HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
GDEFALVIKGDIDSEALQAFGKHLCDLMHESFELSDMPIQIGATLGLATYPATADNATQL
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCEECEEECCCCCCCHHHH
FEFADYALYQGKNHNPGTTCLFSASHREQLHADGVTEQALRRANLETEFHVLFQPIIESC
HHHHHHHHHCCCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
TRETVAFEALARWNSPELGAVSPAHFIPIAERIGMINKLTVPLLTQALSMALSWPAPVRL
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEE
SFNLSAHDCATWESVNRIVEIIEHSGFDASRLDLEITETAVMQDIAQVQQAITQFRKLGC
EEECCCCCHHHHHHHHHHHHHHHHCCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHCC
GISLDDFGTGFSSLSQLHALALTKLKIDRSFVTGVHNNPASYKIVKSLVALSLDMSLGCV
CCCHHHCCCCHHHHHHHHHHHHHHHEECHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEE
IEGVETQDELNALTTLGCTMVQGYFYSPPISFAETLAWIEIPDEERTFGYAASCPL
EECCCCHHHHHHHHHHHHHHHCCEECCCCHHHHHHEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]