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The map label for this gene is ydhC [H]

Identifier: 66045946

GI number: 66045946

Start: 3291199

End: 3291909

Strand: Reverse

Name: ydhC [H]

Synonym: Psyr_2710

Alternate gene names: 66045946

Gene position: 3291909-3291199 (Counterclockwise)

Preceding gene: 66045947

Following gene: 66045942

Centisome position: 54.02

GC content: 64.28

Gene sequence:

>711_bases
ATGAGCAAACCCGGGCAGACCGTCCTTGTTGCGCTGCGCAAGATGATCGCATCAGGCGAGCTGGCTGCCGGTGAGCGCCT
GATGGAGGTGCCGACCGCCGAGCTGTTCGGCGTGTCGCGCATGCCGGTGCGCATGGCGTTCCGCACGCTGGAGCAGGAAG
GGCTGCTGGTGCCCTTTGGCGGGCGTGGATTTCAGGTGCGTTTGATCAGCCCGATGGAAATCGCCGGTGCGGTGGATGTC
CGCGGTGTCCTGGAGGGGCTTGCTGCGCGGCAAATGGCCGAGCGCGGCGTGACCCAGGAGGCGCGCGACGAACTGGAGGC
CTGTCTGGTGCAGGGTGACGCGCTGTTCGAGAAAGGCCATGTCACTGAAGATGACCTTGAGGTCTATCACGACATGAACA
TGCGTCTGCATCGCGTGATCGTCGAGGGCAGCGGAAATCGCGCCATTGCCGATGCACTGTCGCGCAACGACCATCTGCCT
TTTGCCTCGGTGACCGCGCTGGCCGTGGATCGCGACAACCTGATTCGCGAATACCGGCGGTTCAATTTCGCCCACATGCA
GCATCACGCCGTGGTGGATGCGCTGGTCAACGGGCAGGGCGCTCGCGCCGAGGCCATCATGCGCGAGCATGCCAACGCCA
CCTTGCGCTATGCGGAAATCTTCGGCGCCGGGCAGAACGAGCGCGTGAAGGTCATTCAGCGCCCGGACTGA

Upstream 100 bases:

>100_bases
GTTACGCCGCTTCGTGCCCCCTCTGATCGATTGCATGTGGGCGATTCACTCGGGCGCGCGTGGGGTAAGATGCCTTTTTT
GATCCCCACGGAAGCCTTTG

Downstream 100 bases:

>100_bases
TCAGATATCGAGCACCAGCACGGGCGTCTTCGAACGCGAGCAGCAGGGCGTGAACTGATCGTTGAGCGCCTGCTCGTCTT
CGGTCAGAAACAGATCGCGA

Product: transcriptional regulator GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSKPGQTVLVALRKMIASGELAAGERLMEVPTAELFGVSRMPVRMAFRTLEQEGLLVPFGGRGFQVRLISPMEIAGAVDV
RGVLEGLAARQMAERGVTQEARDELEACLVQGDALFEKGHVTEDDLEVYHDMNMRLHRVIVEGSGNRAIADALSRNDHLP
FASVTALAVDRDNLIREYRRFNFAHMQHHAVVDALVNGQGARAEAIMREHANATLRYAEIFGAGQNERVKVIQRPD

Sequences:

>Translated_236_residues
MSKPGQTVLVALRKMIASGELAAGERLMEVPTAELFGVSRMPVRMAFRTLEQEGLLVPFGGRGFQVRLISPMEIAGAVDV
RGVLEGLAARQMAERGVTQEARDELEACLVQGDALFEKGHVTEDDLEVYHDMNMRLHRVIVEGSGNRAIADALSRNDHLP
FASVTALAVDRDNLIREYRRFNFAHMQHHAVVDALVNGQGARAEAIMREHANATLRYAEIFGAGQNERVKVIQRPD
>Mature_235_residues
SKPGQTVLVALRKMIASGELAAGERLMEVPTAELFGVSRMPVRMAFRTLEQEGLLVPFGGRGFQVRLISPMEIAGAVDVR
GVLEGLAARQMAERGVTQEARDELEACLVQGDALFEKGHVTEDDLEVYHDMNMRLHRVIVEGSGNRAIADALSRNDHLPF
ASVTALAVDRDNLIREYRRFNFAHMQHHAVVDALVNGQGARAEAIMREHANATLRYAEIFGAGQNERVKVIQRPD

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26082; Mature: 25951

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPGQTVLVALRKMIASGELAAGERLMEVPTAELFGVSRMPVRMAFRTLEQEGLLVPFG
CCCCHHHHHHHHHHHHHCCCHHHCCHHHHCCCHHHHCCCCCHHHHHHHHHHHCCEEEEEC
GRGFQVRLISPMEIAGAVDVRGVLEGLAARQMAERGVTQEARDELEACLVQGDALFEKGH
CCCEEEEEECCHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCC
VTEDDLEVYHDMNMRLHRVIVEGSGNRAIADALSRNDHLPFASVTALAVDRDNLIREYRR
CCHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCCCCHHHHHEEEECHHHHHHHHHH
FNFAHMQHHAVVDALVNGQGARAEAIMREHANATLRYAEIFGAGQNERVKVIQRPD
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEHHHHCCCCCCCEEEEECCC
>Mature Secondary Structure 
SKPGQTVLVALRKMIASGELAAGERLMEVPTAELFGVSRMPVRMAFRTLEQEGLLVPFG
CCCHHHHHHHHHHHHHCCCHHHCCHHHHCCCHHHHCCCCCHHHHHHHHHHHCCEEEEEC
GRGFQVRLISPMEIAGAVDVRGVLEGLAARQMAERGVTQEARDELEACLVQGDALFEKGH
CCCEEEEEECCHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCC
VTEDDLEVYHDMNMRLHRVIVEGSGNRAIADALSRNDHLPFASVTALAVDRDNLIREYRR
CCHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCCCCHHHHHEEEECHHHHHHHHHH
FNFAHMQHHAVVDALVNGQGARAEAIMREHANATLRYAEIFGAGQNERVKVIQRPD
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEHHHHCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]