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The map label for this gene is rpoE [C]

Identifier: 66045336

GI number: 66045336

Start: 2444019

End: 2444609

Strand: Direct

Name: rpoE [C]

Synonym: Psyr_2096

Alternate gene names: 66045336

Gene position: 2444019-2444609 (Clockwise)

Preceding gene: 66045335

Following gene: 66045337

Centisome position: 40.11

GC content: 49.58

Gene sequence:

>591_bases
TTGAATAAACCTCAACCGTTTTCGACGCGCTATGATCCACACGAGCTCTCAGACGAGGAGCTGGTTGCGCGCGCCCACGT
TGAGCTGTTCAATGTGACGCGGGCCTACGAAGAATTGATGCGCCGTTACCAGAGAACACTTTTTAACGTCTGTGCACGTT
ATCTGGGGAACGATCGCGACGCTGACGATGTCTGTCAGGAGGTGATGCTTAAAGTGTTGTATGGGTTGAAAAATTTTGAA
GGTAAATCTAAATTTAAAACCTGGCTGTACAGCATCACCTACAATGAATGCATCACGCAGTACAGGAAGGAACGGCGTAA
GCGTCGCTTGATGGACGCGCTGAGTCTGGATCCACTTGAGGAAGCGTCGGAAGAAAAGGCGCCCAAACCTGAAGAACGGG
GCGGACTTGATCGCTGGCTTGTGTATGTGAACCCGATCGATCGGGAGATTCTGGTCCTGCGGTTTGTTGCAGAACTTGAA
TTCCAGGAAATCGCTGACATCATGCACATGGGCTTGAGCGCAACGAAAATGCGTTACAAGCGGGCTTTAGATAAATTACG
AGAGAAATTTGCGGGAATCGCCGAAACTTAA

Upstream 100 bases:

>100_bases
AGAGTAAGCAGCCGTTAAGCGGTTAACCTGCTAATGTATGCCGCCAGGTTGCCGATACAGGCCATGGCGGACATTGACCT
GACTGTCGGCAAGATTTGTT

Downstream 100 bases:

>100_bases
TACGGTGCAAATATCTCTAACAAACTGGCAAGGTCTGGTAGACTTGCCGCTGAGTTGTCCCCCTGTGTGGGACTGCTTAA
TAATCATCAGATGGGGATTT

Product: RNA polymerase sigma factor SigX

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor SigX; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor SigW; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; ECF Subfamily RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase Ecf-Type Sigma Factor; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MNKPQPFSTRYDPHELSDEELVARAHVELFNVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFE
GKSKFKTWLYSITYNECITQYRKERRKRRLMDALSLDPLEEASEEKAPKPEERGGLDRWLVYVNPIDREILVLRFVAELE
FQEIADIMHMGLSATKMRYKRALDKLREKFAGIAET

Sequences:

>Translated_196_residues
MNKPQPFSTRYDPHELSDEELVARAHVELFNVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFE
GKSKFKTWLYSITYNECITQYRKERRKRRLMDALSLDPLEEASEEKAPKPEERGGLDRWLVYVNPIDREILVLRFVAELE
FQEIADIMHMGLSATKMRYKRALDKLREKFAGIAET
>Mature_196_residues
MNKPQPFSTRYDPHELSDEELVARAHVELFNVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFE
GKSKFKTWLYSITYNECITQYRKERRKRRLMDALSLDPLEEASEEKAPKPEERGGLDRWLVYVNPIDREILVLRFVAELE
FQEIADIMHMGLSATKMRYKRALDKLREKFAGIAET

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23283; Mature: 23283

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPQPFSTRYDPHELSDEELVARAHVELFNVTRAYEELMRRYQRTLFNVCARYLGNDRD
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNECITQYRKERRKRRLMDALSLDPLE
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
EASEEKAPKPEERGGLDRWLVYVNPIDREILVLRFVAELEFQEIADIMHMGLSATKMRYK
HHHHHCCCCCHHHCCHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
RALDKLREKFAGIAET
HHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNKPQPFSTRYDPHELSDEELVARAHVELFNVTRAYEELMRRYQRTLFNVCARYLGNDRD
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNECITQYRKERRKRRLMDALSLDPLE
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
EASEEKAPKPEERGGLDRWLVYVNPIDREILVLRFVAELEFQEIADIMHMGLSATKMRYK
HHHHHCCCCCHHHCCHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
RALDKLREKFAGIAET
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA