Click here to switch to the map view.

The map label for this gene is sotB [H]

Identifier: 66044120

GI number: 66044120

Start: 984855

End: 986063

Strand: Direct

Name: sotB [H]

Synonym: Psyr_0865

Alternate gene names: 66044120

Gene position: 984855-986063 (Clockwise)

Preceding gene: 66044119

Following gene: 66044123

Centisome position: 16.16

GC content: 62.94

Gene sequence:

>1209_bases
TTGATAACTTCACCTCCAAACGAGCAGGCAGGTAGCTGGCTTGGCGTATTCGCGCTGGCCTTGGCGGCCTTCATTTTCAA
TACCACCGAGTTCGTGCCGATCGGTCTGCTGAGTAACATCGGCCAGAGCTTCGAAATGACCCCGGCCCAGGTCGGGCTGA
TGCTCACGATCTATGCCTGGGTCGTGTCGCTGATGTCGTTGCCGATGATGCTGGCGACGCGCAACATCGAGCGCCGCAAG
TTGCTGATGTTCGTGTTCGGCCTGTTCGTGGTCAGCCACGTCCTTTCCGCGATTGCCCCCAGCTTCGCGATCCTGCTGGT
GAGCCGGGTCGGTATCGCGTTTGCACATGCGGTGTTCTGGTCGGTCACGGCGTCGCTGGCCGTGCGCATCGCACCGCCCG
GCAAGCAGGTTCAGGCGCTGGGCCTGCTGGCGACCGGTACGTCGCTGGCGATGGTATTGGGTATTCCGCTGGGCCGCGTG
CTGGGTGAAGCCCTGGGCTGGCGCACCACCTTTCTGGGCATCGCCGCCATCGCTGCGCTGGTAGTCTTCCTGCTGGTTCG
CGCGCTGCCTTTGCTGCCCAGTCAGAACTCAGGCTCGTTGCGCAGCCTGCCGATCCTGTTCAAGCGCCCACGGCTGATGG
CGATCTACCTGCTGACCGCCATCGTGGTGACCGCTCATTTCACCGCCTACAGCTATATCGAGCCGTTCACTCAGACCGTG
TCCCTGCTCAGCGGCGAAATGACCACGATCCTGCTGCTGGTCTTTGGCGGGGCCGGGATCATGGGCTCGATCATCTTCAG
CCTGTTCAGCGATCGCTTCCCCAACGGGCTGTTGATCACGGCCATTGGCACGCTGACCCTGTGCCTGCTGATGCTGTTGC
CGCTCTCCGGTGATGCCGTGACGCTCGGCACGCTGACCATTATCTGGGGCATGGCGATCATGTGCTTCGGCCTGACCTTG
CAGGCGCGCGTACTGTCGCTGGCACCCGATGCGACCGATGTGGCGATGGCGCTGTTCTCGGGCATCTTCAATATCGGTAT
TGGCGGCGGCGCGCTGCTCGGCAGTGTGGTCAGCAGCCATCTCGGGGTTGCCAATGTCGGCATCGTCGGCGGCCTGCTGG
CCCTCGGCGGGTTGGGGCTGTGCTGCTACACAACGCATCACTTCGGCAAGGTCCGGCCTGCTGCCGAGATGCAGGCCGAG
AGCAAATAG

Upstream 100 bases:

>100_bases
TCAGTGGGGCGAGCCGCGGTTTTGCATACAGGTGTCAGGCGTGGTGTTCATGCGTGGCGATCGGCCTTCGGGTCGGAACA
TTTTCAGGGCGTTGTGATTC

Downstream 100 bases:

>100_bases
GACGGGCATAAAAAAGCTCGCTGACGCGCAATGCGTTCAGCGAGCTTTTTGGTCTGGCTTGCAGGTCAGGCTTTAAGACG
ACCCAGCCACTCCAGCGACG

Product: sugar efflux transporter

Products: arabinose [Periplasm]; Proton [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MITSPPNEQAGSWLGVFALALAAFIFNTTEFVPIGLLSNIGQSFEMTPAQVGLMLTIYAWVVSLMSLPMMLATRNIERRK
LLMFVFGLFVVSHVLSAIAPSFAILLVSRVGIAFAHAVFWSVTASLAVRIAPPGKQVQALGLLATGTSLAMVLGIPLGRV
LGEALGWRTTFLGIAAIAALVVFLLVRALPLLPSQNSGSLRSLPILFKRPRLMAIYLLTAIVVTAHFTAYSYIEPFTQTV
SLLSGEMTTILLLVFGGAGIMGSIIFSLFSDRFPNGLLITAIGTLTLCLLMLLPLSGDAVTLGTLTIIWGMAIMCFGLTL
QARVLSLAPDATDVAMALFSGIFNIGIGGGALLGSVVSSHLGVANVGIVGGLLALGGLGLCCYTTHHFGKVRPAAEMQAE
SK

Sequences:

>Translated_402_residues
MITSPPNEQAGSWLGVFALALAAFIFNTTEFVPIGLLSNIGQSFEMTPAQVGLMLTIYAWVVSLMSLPMMLATRNIERRK
LLMFVFGLFVVSHVLSAIAPSFAILLVSRVGIAFAHAVFWSVTASLAVRIAPPGKQVQALGLLATGTSLAMVLGIPLGRV
LGEALGWRTTFLGIAAIAALVVFLLVRALPLLPSQNSGSLRSLPILFKRPRLMAIYLLTAIVVTAHFTAYSYIEPFTQTV
SLLSGEMTTILLLVFGGAGIMGSIIFSLFSDRFPNGLLITAIGTLTLCLLMLLPLSGDAVTLGTLTIIWGMAIMCFGLTL
QARVLSLAPDATDVAMALFSGIFNIGIGGGALLGSVVSSHLGVANVGIVGGLLALGGLGLCCYTTHHFGKVRPAAEMQAE
SK
>Mature_402_residues
MITSPPNEQAGSWLGVFALALAAFIFNTTEFVPIGLLSNIGQSFEMTPAQVGLMLTIYAWVVSLMSLPMMLATRNIERRK
LLMFVFGLFVVSHVLSAIAPSFAILLVSRVGIAFAHAVFWSVTASLAVRIAPPGKQVQALGLLATGTSLAMVLGIPLGRV
LGEALGWRTTFLGIAAIAALVVFLLVRALPLLPSQNSGSLRSLPILFKRPRLMAIYLLTAIVVTAHFTAYSYIEPFTQTV
SLLSGEMTTILLLVFGGAGIMGSIIFSLFSDRFPNGLLITAIGTLTLCLLMLLPLSGDAVTLGTLTIIWGMAIMCFGLTL
QARVLSLAPDATDVAMALFSGIFNIGIGGGALLGSVVSSHLGVANVGIVGGLLALGGLGLCCYTTHHFGKVRPAAEMQAE
SK

Specific function: Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family [H]

Homologues:

Organism=Escherichia coli, GI1787808, Length=377, Percent_Identity=58.8859416445623, Blast_Score=392, Evalue=1e-110,
Organism=Escherichia coli, GI1787947, Length=326, Percent_Identity=28.8343558282209, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI145693198, Length=300, Percent_Identity=29, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1786595, Length=341, Percent_Identity=25.8064516129032, Blast_Score=93, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42238; Mature: 42238

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS00178 AA_TRNA_LIGASE_I ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITSPPNEQAGSWLGVFALALAAFIFNTTEFVPIGLLSNIGQSFEMTPAQVGLMLTIYAW
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
VVSLMSLPMMLATRNIERRKLLMFVFGLFVVSHVLSAIAPSFAILLVSRVGIAFAHAVFW
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVTASLAVRIAPPGKQVQALGLLATGTSLAMVLGIPLGRVLGEALGWRTTFLGIAAIAAL
HHHHHHEEEECCCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VVFLLVRALPLLPSQNSGSLRSLPILFKRPRLMAIYLLTAIVVTAHFTAYSYIEPFTQTV
HHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLSGEMTTILLLVFGGAGIMGSIIFSLFSDRFPNGLLITAIGTLTLCLLMLLPLSGDAV
HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCEE
TLGTLTIIWGMAIMCFGLTLQARVLSLAPDATDVAMALFSGIFNIGIGGGALLGSVVSSH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LGVANVGIVGGLLALGGLGLCCYTTHHFGKVRPAAEMQAESK
CCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHCCCCC
>Mature Secondary Structure
MITSPPNEQAGSWLGVFALALAAFIFNTTEFVPIGLLSNIGQSFEMTPAQVGLMLTIYAW
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
VVSLMSLPMMLATRNIERRKLLMFVFGLFVVSHVLSAIAPSFAILLVSRVGIAFAHAVFW
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVTASLAVRIAPPGKQVQALGLLATGTSLAMVLGIPLGRVLGEALGWRTTFLGIAAIAAL
HHHHHHEEEECCCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VVFLLVRALPLLPSQNSGSLRSLPILFKRPRLMAIYLLTAIVVTAHFTAYSYIEPFTQTV
HHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLLSGEMTTILLLVFGGAGIMGSIIFSLFSDRFPNGLLITAIGTLTLCLLMLLPLSGDAV
HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCEE
TLGTLTIIWGMAIMCFGLTLQARVLSLAPDATDVAMALFSGIFNIGIGGGALLGSVVSSH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LGVANVGIVGGLLALGGLGLCCYTTHHFGKVRPAAEMQAESK
CCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: arabinose [Cytoplasm]; Proton [Periplasm] [C]

Specific reaction: arabinose [Cytoplasm] + Proton [Periplasm] = arabinose [Periplasm] + Proton [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12928499 [H]