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The map label for this gene is yciR [C]

Identifier: 66043776

GI number: 66043776

Start: 564626

End: 566785

Strand: Direct

Name: yciR [C]

Synonym: Psyr_0509

Alternate gene names: 66043776

Gene position: 564626-566785 (Clockwise)

Preceding gene: 66043774

Following gene: 66043777

Centisome position: 9.27

GC content: 58.24

Gene sequence:

>2160_bases
ATGCCCACACAGAGAAGCAGCATGGAACGCGTGCCAAACCAGCCAGATGATGGCTCTTCAGTTTTACTTGTTGTAGACGA
TTACCCGGAAAATCTGGTGACGATGTGCGCTGTTCTGCAAAGAACGGACTGGCACATTGTGACTGCAAGTTCCGGAATAG
AAGCATTGACGGTACTTCTCGAGCAGGAAGTCGACCTGGTTTTGCTGGATGTGCAGATGCCGGGCATGGACGGCTTCGAG
GTCGCGCGACTGATGCGTGGCAGTCAGCGCACCCGCCTTACGCCGATTATTTTTCTCACCGCCAATGAGCAGACCCAGGA
TGCGGTGCAAAAGGGCTATGCGAATGGTGCGACGGACTATCTGTTCAAACCCTTCGACCCGAATGTGCTCAAGCCCAAGG
TGCAGACCCTGCTTGAGCAACAGCGCAATCGTCGTGCGCTGCAACAGCTGTCACTGGAGCTGGAGTCGGCCCGTGCGTTC
AACGCGTCGGTGCTGGCCAACGTCGCCGAAGGCATTCTGGTCGTTGACGAAGCAGGCACCATCAGCTTTGCCAACCCGGC
TATCTGTCAGTTATTGAACACCTCCGTCGATCACCTGCGCGGCACCCAGGTGCTGGACTACATCATCGAACCGAAGGTAG
GCCACTGGCTGGATTCGGGCTTTTACCAGCACTATCGCAAGTCCGACACCTATCGGGTGCACGACGCCATTCTGCGTACG
GCGCAAGGCACGCAACTGCCAGTGGCGTTGTCCTGCGCGGCGCTGCCCGCCGAACAGAAGGCAATGGTGCTGACGGTTCT
CGATATGTCGGTGGTTCGTGATCTTTATCAGCAGCTGGAAAAACAGGCCGTCACCGATGCGTTGACAGGCCTGCTCAATC
GCCGGGGACTTTATCAGGCCGTTGAAAGCATGCTGTTGCGCAACGAGCGGGCGGATAAATACCTGGTCGTGCTGTTCATG
GATCTGGATGGTTTCAAGCAGATCAACGACACGCTGGGCCACGAGGCCGGTGATCAGGTATTGCTCTGGGTCGCCGAGCA
GTTCAAGGACAGCATGCGCCCCTATGATGTGCTGGCACGCATCGGCGGCGACGAGTTCACCGTCGTAATCGACGGGCTTG
ATTACCCCGAACAGGCGGCCAAGATCGCCGAAAAGCTCATCGAGCGGGTATCCGGAAGACGCCAGGTCGACGGTGTCGAG
ATCACCCTGGGTGCCAGCGTCGGCATTGCGACCTTTCCGGATTGCGGCTCGAATCTGGACGGTCTGCTGCGCGCGGCAGA
TATCGCCATGTACGAGGCCAAGCGTGCAGGGCGGCAACAATACCGGTTTTACGATCAGAACATGAACGGGCGCGCCCGCT
CGCGACTGATGCTTGAGGAAAGCGTGCGCACGGCCATCGACGGTCGGGATTTTTCAGTGGTGTATCAGCCCCAGATTCAC
GTGGCGGATGGTCGCTTGCGTGGTTTCGAGGCCTTGCTGCGTTGGCAGCATCCAGCGGTCGGAGAGGTCCCGCCTGCGCT
GTTCATTCCGCTGCTGGAAGAGACCAGACTGATCAATCGGCTCGGCAGCTGGATCTTTGATCAGGGCGCCGAGCAGCGTC
AGGCATGGAGCCACATCTTCGCGCCCGACATGGTGCTGAGTGTCTGTGTCAGCCCCACACAATTCTGCCTGCCCAATCTG
GCCTCGGAATTGAAACGCGCCATGGATCGCTTCGAGCTGAAACCGGGGCAGATAGAGGTGGAAATCACTGAAACCGCCCT
GGTCAACAACCTGACGCACAGCCACAAACAGCTGAAGTTGTTGCATGAGGTCGGTGTGCGCATTGCGCTCGACGACTTTG
GTACCGGCGAATGCTCGCTGTCGCACCTGCGCAATCTGCAACTCGACACCTTGAAGCTGGACAGGCGTTTTGTGGCCAAT
ATTGCAGGGTCAAAGCGCGAGGCGGCGATGGCCAGCAGTATCATCGACCTGAGCCGCAACCTCGATATGCTGGTTATTGC
CGAGGGGGTCGAGACTGCCGAGCAATACCAGTGGCTGGCAGACAACGGCTGTCAGGTCATGCAGGGCTTTTTGATCGCTC
ATCCGATGTTGCCGGAAGATGCGTTGCGCTTTCCCGGGCACTTTGATGTGGCGGGCTTCAGGCAAACCAGATTGTTGTAG

Upstream 100 bases:

>100_bases
CGAACTTTGACAGTAGGGAAGAGGCGCCTTGCTTCTGCTTTTGGCGAGACGAGGCTAGAGTTATTCCAAAGTATGACGGT
CGTCCTGAGTCTCAGGCGTC

Downstream 100 bases:

>100_bases
AATGGCGTTTTTCGATCTCATGCAAAGGCCCCATGACTGCATCCAGCCCTGCTCCGCTCAAATACCTGCAGGCCTATCCG
CAGGCCCTGCAGGATCAGGT

Product: PAS:GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 719; Mature: 718

Protein sequence:

>719_residues
MPTQRSSMERVPNQPDDGSSVLLVVDDYPENLVTMCAVLQRTDWHIVTASSGIEALTVLLEQEVDLVLLDVQMPGMDGFE
VARLMRGSQRTRLTPIIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELESARAF
NASVLANVAEGILVVDEAGTISFANPAICQLLNTSVDHLRGTQVLDYIIEPKVGHWLDSGFYQHYRKSDTYRVHDAILRT
AQGTQLPVALSCAALPAEQKAMVLTVLDMSVVRDLYQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVVLFM
DLDGFKQINDTLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERVSGRRQVDGVE
ITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNGRARSRLMLEESVRTAIDGRDFSVVYQPQIH
VADGRLRGFEALLRWQHPAVGEVPPALFIPLLEETRLINRLGSWIFDQGAEQRQAWSHIFAPDMVLSVCVSPTQFCLPNL
ASELKRAMDRFELKPGQIEVEITETALVNNLTHSHKQLKLLHEVGVRIALDDFGTGECSLSHLRNLQLDTLKLDRRFVAN
IAGSKREAAMASSIIDLSRNLDMLVIAEGVETAEQYQWLADNGCQVMQGFLIAHPMLPEDALRFPGHFDVAGFRQTRLL

Sequences:

>Translated_719_residues
MPTQRSSMERVPNQPDDGSSVLLVVDDYPENLVTMCAVLQRTDWHIVTASSGIEALTVLLEQEVDLVLLDVQMPGMDGFE
VARLMRGSQRTRLTPIIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELESARAF
NASVLANVAEGILVVDEAGTISFANPAICQLLNTSVDHLRGTQVLDYIIEPKVGHWLDSGFYQHYRKSDTYRVHDAILRT
AQGTQLPVALSCAALPAEQKAMVLTVLDMSVVRDLYQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVVLFM
DLDGFKQINDTLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERVSGRRQVDGVE
ITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNGRARSRLMLEESVRTAIDGRDFSVVYQPQIH
VADGRLRGFEALLRWQHPAVGEVPPALFIPLLEETRLINRLGSWIFDQGAEQRQAWSHIFAPDMVLSVCVSPTQFCLPNL
ASELKRAMDRFELKPGQIEVEITETALVNNLTHSHKQLKLLHEVGVRIALDDFGTGECSLSHLRNLQLDTLKLDRRFVAN
IAGSKREAAMASSIIDLSRNLDMLVIAEGVETAEQYQWLADNGCQVMQGFLIAHPMLPEDALRFPGHFDVAGFRQTRLL
>Mature_718_residues
PTQRSSMERVPNQPDDGSSVLLVVDDYPENLVTMCAVLQRTDWHIVTASSGIEALTVLLEQEVDLVLLDVQMPGMDGFEV
ARLMRGSQRTRLTPIIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELESARAFN
ASVLANVAEGILVVDEAGTISFANPAICQLLNTSVDHLRGTQVLDYIIEPKVGHWLDSGFYQHYRKSDTYRVHDAILRTA
QGTQLPVALSCAALPAEQKAMVLTVLDMSVVRDLYQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKYLVVLFMD
LDGFKQINDTLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERVSGRRQVDGVEI
TLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNGRARSRLMLEESVRTAIDGRDFSVVYQPQIHV
ADGRLRGFEALLRWQHPAVGEVPPALFIPLLEETRLINRLGSWIFDQGAEQRQAWSHIFAPDMVLSVCVSPTQFCLPNLA
SELKRAMDRFELKPGQIEVEITETALVNNLTHSHKQLKLLHEVGVRIALDDFGTGECSLSHLRNLQLDTLKLDRRFVANI
AGSKREAAMASSIIDLSRNLDMLVIAEGVETAEQYQWLADNGCQVMQGFLIAHPMLPEDALRFPGHFDVAGFRQTRLL

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=548, Percent_Identity=29.9270072992701, Blast_Score=237, Evalue=2e-63,
Organism=Escherichia coli, GI87081921, Length=504, Percent_Identity=31.7460317460317, Blast_Score=235, Evalue=9e-63,
Organism=Escherichia coli, GI226510982, Length=435, Percent_Identity=28.0459770114943, Blast_Score=194, Evalue=2e-50,
Organism=Escherichia coli, GI1788502, Length=338, Percent_Identity=29.2899408284024, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI87081845, Length=245, Percent_Identity=33.469387755102, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1790496, Length=243, Percent_Identity=30.8641975308642, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI87081980, Length=245, Percent_Identity=32.2448979591837, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=32.6446280991736, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI1787055, Length=259, Percent_Identity=30.5019305019305, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI87082096, Length=425, Percent_Identity=27.7647058823529, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI1786507, Length=261, Percent_Identity=26.4367816091954, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1788381, Length=560, Percent_Identity=25.5357142857143, Blast_Score=115, Evalue=8e-27,
Organism=Escherichia coli, GI1788849, Length=246, Percent_Identity=28.8617886178862, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI145693134, Length=183, Percent_Identity=34.4262295081967, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=35.8823529411765, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=35.2201257861635, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=34.3195266272189, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87081974, Length=178, Percent_Identity=32.0224719101124, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=33.5135135135135, Blast_Score=91, Evalue=4e-19,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=27.8688524590164, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788085, Length=173, Percent_Identity=32.9479768786127, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=35.8823529411765, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=33.5443037974684, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1787410, Length=156, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1789650, Length=448, Percent_Identity=21.2053571428571, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1788713, Length=144, Percent_Identity=35.4166666666667, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1787056, Length=246, Percent_Identity=28.8617886178862, Blast_Score=68, Evalue=3e-12,
Organism=Escherichia coli, GI145693157, Length=130, Percent_Identity=33.0769230769231, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788550, Length=169, Percent_Identity=29.585798816568, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1786599, Length=119, Percent_Identity=31.9327731092437, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87082012, Length=120, Percent_Identity=31.6666666666667, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1788394, Length=134, Percent_Identity=30.5970149253731, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1790863, Length=141, Percent_Identity=28.3687943262411, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 80401; Mature: 80270

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS50112 PAS ; PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTQRSSMERVPNQPDDGSSVLLVVDDYPENLVTMCAVLQRTDWHIVTASSGIEALTVLL
CCCCCCHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
EQEVDLVLLDVQMPGMDGFEVARLMRGSQRTRLTPIIFLTANEQTQDAVQKGYANGATDY
HCCCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHCCCCCCCCC
LFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELESARAFNASVLANVAEGILVVDEAGT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
ISFANPAICQLLNTSVDHLRGTQVLDYIIEPKVGHWLDSGFYQHYRKSDTYRVHDAILRT
EECCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHH
AQGTQLPVALSCAALPAEQKAMVLTVLDMSVVRDLYQQLEKQAVTDALTGLLNRRGLYQA
CCCCCCCEEEEEHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
VESMLLRNERADKYLVVLFMDLDGFKQINDTLGHEAGDQVLLWVAEQFKDSMRPYDVLAR
HHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCEEHHHHHHHHHCCCHHHHHHH
IGGDEFTVVIDGLDYPEQAAKIAEKLIERVSGRRQVDGVEITLGASVGIATFPDCGSNLD
CCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHH
GLLRAADIAMYEAKRAGRQQYRFYDQNMNGRARSRLMLEESVRTAIDGRDFSVVYQPQIH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCEEE
VADGRLRGFEALLRWQHPAVGEVPPALFIPLLEETRLINRLGSWIFDQGAEQRQAWSHIF
EECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
APDMVLSVCVSPTQFCLPNLASELKRAMDRFELKPGQIEVEITETALVNNLTHSHKQLKL
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHH
LHEVGVRIALDDFGTGECSLSHLRNLQLDTLKLDRRFVANIAGSKREAAMASSIIDLSRN
HHHCCCEEEEECCCCCCEEHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
LDMLVIAEGVETAEQYQWLADNGCQVMQGFLIAHPMLPEDALRFPGHFDVAGFRQTRLL
CCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHCCC
>Mature Secondary Structure 
PTQRSSMERVPNQPDDGSSVLLVVDDYPENLVTMCAVLQRTDWHIVTASSGIEALTVLL
CCCCCHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
EQEVDLVLLDVQMPGMDGFEVARLMRGSQRTRLTPIIFLTANEQTQDAVQKGYANGATDY
HCCCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHCCCCCCCCC
LFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELESARAFNASVLANVAEGILVVDEAGT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
ISFANPAICQLLNTSVDHLRGTQVLDYIIEPKVGHWLDSGFYQHYRKSDTYRVHDAILRT
EECCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHH
AQGTQLPVALSCAALPAEQKAMVLTVLDMSVVRDLYQQLEKQAVTDALTGLLNRRGLYQA
CCCCCCCEEEEEHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
VESMLLRNERADKYLVVLFMDLDGFKQINDTLGHEAGDQVLLWVAEQFKDSMRPYDVLAR
HHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCEEHHHHHHHHHCCCHHHHHHH
IGGDEFTVVIDGLDYPEQAAKIAEKLIERVSGRRQVDGVEITLGASVGIATFPDCGSNLD
CCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHH
GLLRAADIAMYEAKRAGRQQYRFYDQNMNGRARSRLMLEESVRTAIDGRDFSVVYQPQIH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCEEE
VADGRLRGFEALLRWQHPAVGEVPPALFIPLLEETRLINRLGSWIFDQGAEQRQAWSHIF
EECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
APDMVLSVCVSPTQFCLPNLASELKRAMDRFELKPGQIEVEITETALVNNLTHSHKQLKL
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHH
LHEVGVRIALDDFGTGECSLSHLRNLQLDTLKLDRRFVANIAGSKREAAMASSIIDLSRN
HHHCCCEEEEECCCCCCEEHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
LDMLVIAEGVETAEQYQWLADNGCQVMQGFLIAHPMLPEDALRFPGHFDVAGFRQTRLL
CCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]