Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
---|---|
Accession | NC_007005 |
Length | 6,093,698 |
Click here to switch to the map view.
The map label for this gene is putP [H]
Identifier: 66043774
GI number: 66043774
Start: 562015
End: 563574
Strand: Direct
Name: putP [H]
Synonym: Psyr_0507
Alternate gene names: 66043774
Gene position: 562015-563574 (Clockwise)
Preceding gene: 66043771
Following gene: 66043776
Centisome position: 9.22
GC content: 59.29
Gene sequence:
>1560_bases ATGTGCCGAATATCGGTCGCTATTCCCTTTGGCATCGGGTGCCAACATAAAAACAATGCCAAGGCAGAACTCATGAGTGT CAGCAACCCTACCTTGATCACGTTCGTGATCTATATAGCGGCAATGGTATTGATCGGCCTGATGGCCTATCGCTCTACCA ACAACCTTTCGGATTACATTCTCGGCGGACGCAGCCTCGGCAGCGTGGTCACCGCTCTTTCAGCAGGAGCCTCGGACATG AGCGGCTGGCTGTTGATGGGGTTGCCCGGTGCCATCTATATGTCCGGCCTGTCGGAAAGCTGGATCGCCATCGGCCTGAT CATCGGCGCCTACCTGAACTGGCTGTTCGTGGCCGGCCGTCTGCGTGTGCAGACAGAGCACAACGGTGACGCACTGACCC TGCCGGATTACTTCAGCAGCCGTTTCGAAGACAACAGTGGCCTGCTGCGGATCATTTCGGCCATCGTGATTCTGGTGTTC TTCACCATTTATTGCGCCTCGGGCATCGTTGCGGGCGCGCGTCTGTTTGAAAGCACCTTCGGCATGTCCTATGAAACCGC CCTGTGGGCCGGCGCTGCGGCGACCATCGCCTACACCTTCGTCGGTGGTTTCCTGGCGGTGAGCTGGACAGACACCGTGC AGGCCACGCTGATGATCTTCGCCCTTATCCTGACGCCGGTCATCGTTCTGCTGGCAACGGGCGGCGTCGACACCACCTTT CTGGCGATCGAAGCGAAAGACCCGACCAGCTTCGACATGTTCAAGAACACCACATTCATCGGCATCATTTCCCTGCTCGG CTGGGGCCTGGGTTATTTCGGTCAGCCACATATCCTGGCGCGCTTCATGGCGGCCGATTCGGTCAAGTCGATTGCCAGCG CCCGACGCATCTCCATGGCCTGGATGATCCTGTGCCTGGGCGGCACCGTGGCGGTGGGTTTCTTCGGCATCGCTTATTTT TCCGCGCACCCTGAGGTCGCCGGGCCGGTTACCGAGAACCCGGAGCGGGTGTTCATCGAGCTGGCCAAGCTGCTGTTCAA TCCGTGGATTGCCGGCGTGCTGTTGTCGGCCATTCTGGCTGCGGTGATGAGTACGCTGAGCTGCCAGTTGCTGGTGTGCT CCAGCGCGTTGACCGAGGACTTCTACAAGGCTTATCTGCGCAAGGGCGCTTCGCAGGTCGAGCTGGTCTGGGTAGGTCGG GCAATGGTGCTGCTGATCGCGATCATTGCCATTCTGCTGGCGGCCAATCCTGAAAACCGCGTGCTGGGCCTGGTGAGTTA CGCCTGGGCCGGTTTCGGCGCAGCCTTCGGGCCTGTGGTACTGATTTCGGTACTGTGGAAGGGCATGACTCGCAACGGCG CTCTGGCCGGGGTCATTATGGGTGCGGCCACCGTGGTGCTCTGGAAGCAATTCAGTACCATGGGGCTGTATGAAATCATC CCCGGTTTCATCCTGGCCAGCATCTCCATCGTGGTATTCAGCCTGATCGGCAAGCCTGCTTCTGCGTCCATGCAGACCCG TTTCCTGGCCGCCGAACAGGATTTCAAAGCCAACCGCTGA
Upstream 100 bases:
>100_bases ATTGTTTAATAGGATTCGTTCCCGCGGTGCAACCGCCAGTCATTGATTGCCGATCCTTGCGGAGCGATCAGTCAACGCGG TGTCGGGTGCAAAAGCAGGG
Downstream 100 bases:
>100_bases CAGGTCTGACTGAAACACAAACGGCCCGTTCTTCTTCGTGAAGCGCGGGCCGTTGTGTATTCAGGCTGAGAGCTGCGTGC CGCTCAGCTCTCGTTGTGAT
Product: Na+/solute symporter
Products: NA
Alternate protein names: Proline permease; Propionate transporter [H]
Number of amino acids: Translated: 519; Mature: 519
Protein sequence:
>519_residues MCRISVAIPFGIGCQHKNNAKAELMSVSNPTLITFVIYIAAMVLIGLMAYRSTNNLSDYILGGRSLGSVVTALSAGASDM SGWLLMGLPGAIYMSGLSESWIAIGLIIGAYLNWLFVAGRLRVQTEHNGDALTLPDYFSSRFEDNSGLLRIISAIVILVF FTIYCASGIVAGARLFESTFGMSYETALWAGAAATIAYTFVGGFLAVSWTDTVQATLMIFALILTPVIVLLATGGVDTTF LAIEAKDPTSFDMFKNTTFIGIISLLGWGLGYFGQPHILARFMAADSVKSIASARRISMAWMILCLGGTVAVGFFGIAYF SAHPEVAGPVTENPERVFIELAKLLFNPWIAGVLLSAILAAVMSTLSCQLLVCSSALTEDFYKAYLRKGASQVELVWVGR AMVLLIAIIAILLAANPENRVLGLVSYAWAGFGAAFGPVVLISVLWKGMTRNGALAGVIMGAATVVLWKQFSTMGLYEII PGFILASISIVVFSLIGKPASASMQTRFLAAEQDFKANR
Sequences:
>Translated_519_residues MCRISVAIPFGIGCQHKNNAKAELMSVSNPTLITFVIYIAAMVLIGLMAYRSTNNLSDYILGGRSLGSVVTALSAGASDM SGWLLMGLPGAIYMSGLSESWIAIGLIIGAYLNWLFVAGRLRVQTEHNGDALTLPDYFSSRFEDNSGLLRIISAIVILVF FTIYCASGIVAGARLFESTFGMSYETALWAGAAATIAYTFVGGFLAVSWTDTVQATLMIFALILTPVIVLLATGGVDTTF LAIEAKDPTSFDMFKNTTFIGIISLLGWGLGYFGQPHILARFMAADSVKSIASARRISMAWMILCLGGTVAVGFFGIAYF SAHPEVAGPVTENPERVFIELAKLLFNPWIAGVLLSAILAAVMSTLSCQLLVCSSALTEDFYKAYLRKGASQVELVWVGR AMVLLIAIIAILLAANPENRVLGLVSYAWAGFGAAFGPVVLISVLWKGMTRNGALAGVIMGAATVVLWKQFSTMGLYEII PGFILASISIVVFSLIGKPASASMQTRFLAAEQDFKANR >Mature_519_residues MCRISVAIPFGIGCQHKNNAKAELMSVSNPTLITFVIYIAAMVLIGLMAYRSTNNLSDYILGGRSLGSVVTALSAGASDM SGWLLMGLPGAIYMSGLSESWIAIGLIIGAYLNWLFVAGRLRVQTEHNGDALTLPDYFSSRFEDNSGLLRIISAIVILVF FTIYCASGIVAGARLFESTFGMSYETALWAGAAATIAYTFVGGFLAVSWTDTVQATLMIFALILTPVIVLLATGGVDTTF LAIEAKDPTSFDMFKNTTFIGIISLLGWGLGYFGQPHILARFMAADSVKSIASARRISMAWMILCLGGTVAVGFFGIAYF SAHPEVAGPVTENPERVFIELAKLLFNPWIAGVLLSAILAAVMSTLSCQLLVCSSALTEDFYKAYLRKGASQVELVWVGR AMVLLIAIIAILLAANPENRVLGLVSYAWAGFGAAFGPVVLISVLWKGMTRNGALAGVIMGAATVVLWKQFSTMGLYEII PGFILASISIVVFSLIGKPASASMQTRFLAAEQDFKANR
Specific function: Catalyzes the sodium-dependent uptake of extracellular L-proline. This protein is also capable of using lithium as the transport cation. Also catalyzes the uptake of propionate [H]
COG id: COG0591
COG function: function code ER; Na+/proline symporter
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]
Homologues:
Organism=Homo sapiens, GI310128183, Length=511, Percent_Identity=46.7710371819961, Blast_Score=441, Evalue=1e-123, Organism=Homo sapiens, GI110835708, Length=485, Percent_Identity=23.2989690721649, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI14140236, Length=510, Percent_Identity=22.7450980392157, Blast_Score=68, Evalue=3e-11, Organism=Escherichia coli, GI1787251, Length=493, Percent_Identity=74.8478701825558, Blast_Score=733, Evalue=0.0, Organism=Escherichia coli, GI1790503, Length=481, Percent_Identity=25.7796257796258, Blast_Score=125, Evalue=9e-30, Organism=Escherichia coli, GI87082237, Length=449, Percent_Identity=27.6169265033408, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1790113, Length=401, Percent_Identity=24.6882793017456, Blast_Score=63, Evalue=4e-11, Organism=Caenorhabditis elegans, GI115533094, Length=421, Percent_Identity=26.1282660332542, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24645928, Length=404, Percent_Identity=26.2376237623762, Blast_Score=89, Evalue=9e-18, Organism=Drosophila melanogaster, GI221459584, Length=380, Percent_Identity=24.2105263157895, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI221459588, Length=372, Percent_Identity=24.7311827956989, Blast_Score=73, Evalue=4e-13, Organism=Drosophila melanogaster, GI24640370, Length=414, Percent_Identity=21.256038647343, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011851 - InterPro: IPR001734 - InterPro: IPR018212 - InterPro: IPR019900 [H]
Pfam domain/function: PF00474 SSF [H]
EC number: NA
Molecular weight: Translated: 55431; Mature: 55431
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: PS00456 NA_SOLUT_SYMP_1 ; PS50283 NA_SOLUT_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCRISVAIPFGIGCQHKNNAKAELMSVSNPTLITFVIYIAAMVLIGLMAYRSTNNLSDYI CEEEEEEEECCCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LGGRSLGSVVTALSAGASDMSGWLLMGLPGAIYMSGLSESWIAIGLIIGAYLNWLFVAGR CCCCHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCE LRVQTEHNGDALTLPDYFSSRFEDNSGLLRIISAIVILVFFTIYCASGIVAGARLFESTF EEEEECCCCCEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GMSYETALWAGAAATIAYTFVGGFLAVSWTDTVQATLMIFALILTPVIVLLATGGVDTTF CCCHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE LAIEAKDPTSFDMFKNTTFIGIISLLGWGLGYFGQPHILARFMAADSVKSIASARRISMA EEEECCCCCCHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH WMILCLGGTVAVGFFGIAYFSAHPEVAGPVTENPERVFIELAKLLFNPWIAGVLLSAILA HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AVMSTLSCQLLVCSSALTEDFYKAYLRKGASQVELVWVGRAMVLLIAIIAILLAANPENR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCC VLGLVSYAWAGFGAAFGPVVLISVLWKGMTRNGALAGVIMGAATVVLWKQFSTMGLYEII EEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH PGFILASISIVVFSLIGKPASASMQTRFLAAEQDFKANR HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCC >Mature Secondary Structure MCRISVAIPFGIGCQHKNNAKAELMSVSNPTLITFVIYIAAMVLIGLMAYRSTNNLSDYI CEEEEEEEECCCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LGGRSLGSVVTALSAGASDMSGWLLMGLPGAIYMSGLSESWIAIGLIIGAYLNWLFVAGR CCCCHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCE LRVQTEHNGDALTLPDYFSSRFEDNSGLLRIISAIVILVFFTIYCASGIVAGARLFESTF EEEEECCCCCEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GMSYETALWAGAAATIAYTFVGGFLAVSWTDTVQATLMIFALILTPVIVLLATGGVDTTF CCCHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE LAIEAKDPTSFDMFKNTTFIGIISLLGWGLGYFGQPHILARFMAADSVKSIASARRISMA EEEECCCCCCHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH WMILCLGGTVAVGFFGIAYFSAHPEVAGPVTENPERVFIELAKLLFNPWIAGVLLSAILA HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AVMSTLSCQLLVCSSALTEDFYKAYLRKGASQVELVWVGRAMVLLIAIIAILLAANPENR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCC VLGLVSYAWAGFGAAFGPVVLISVLWKGMTRNGALAGVIMGAATVVLWKQFSTMGLYEII EEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH PGFILASISIVVFSLIGKPASASMQTRFLAAEQDFKANR HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3302614; 8905232; 9278503; 1400239; 3325781; 3053687; 3053649; 1567896; 8119910 [H]