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The map label for this gene is smpA [H]

Identifier: 59712606

GI number: 59712606

Start: 2235405

End: 2235761

Strand: Direct

Name: smpA [H]

Synonym: VF_1999

Alternate gene names: 59712606

Gene position: 2235405-2235761 (Clockwise)

Preceding gene: 59712605

Following gene: 59712609

Centisome position: 77.15

GC content: 40.62

Gene sequence:

>357_bases
ATGCAATTCAAAAAATGGATCATTGCTCTACCCCTCGCTGTTGGACTACTGGGTGGTTGCTCGTTATTAGAGCCATTGGT
ATATCGAATCGATATTGCCCAAGGTAATTACGTTGAACAAGAAGCTGTCGACAAACTGCGATTTGGCATGACCAAACAAC
AAGTACAGTTTGTAATGGGTTCACCAATGCTCGTTGAGTCTGGTTATCCAAATACGTGGTACTACATTTATCACTTTACT
CATGGCCACGAAAAATCAATTCAAAAGAACTTAATCGTTCACTTTGATGACAATGGTAACCTAACCAATATGGAAGGCGA
CTTCCCGATGAGTGACAGTTTCTTCGAGAAGCTTTAA

Upstream 100 bases:

>100_bases
TAGGGTCAAAACACACTAGAACACGCTTAACCTTTTTACTTCTTAGGTCAGCTTGTTTATCATCTGTTTAATTATTTAAA
AGGCTAAAGCTGTACGAACT

Downstream 100 bases:

>100_bases
TTTCCTCACCGTATTTCAAACACAAAAAAACCGGATCTCGTTTAACGAAATCCGGTTTTTTATTTTCTTAAACTAAGAAA
TTATTTTTTTGCCGCTTCTT

Product: small protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MQFKKWIIALPLAVGLLGGCSLLEPLVYRIDIAQGNYVEQEAVDKLRFGMTKQQVQFVMGSPMLVESGYPNTWYYIYHFT
HGHEKSIQKNLIVHFDDNGNLTNMEGDFPMSDSFFEKL

Sequences:

>Translated_118_residues
MQFKKWIIALPLAVGLLGGCSLLEPLVYRIDIAQGNYVEQEAVDKLRFGMTKQQVQFVMGSPMLVESGYPNTWYYIYHFT
HGHEKSIQKNLIVHFDDNGNLTNMEGDFPMSDSFFEKL
>Mature_118_residues
MQFKKWIIALPLAVGLLGGCSLLEPLVYRIDIAQGNYVEQEAVDKLRFGMTKQQVQFVMGSPMLVESGYPNTWYYIYHFT
HGHEKSIQKNLIVHFDDNGNLTNMEGDFPMSDSFFEKL

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=111, Percent_Identity=39.6396396396396, Blast_Score=95, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 13582; Mature: 13582

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFKKWIIALPLAVGLLGGCSLLEPLVYRIDIAQGNYVEQEAVDKLRFGMTKQQVQFVMG
CCHHHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCCEECHHHHHHHHHCCCHHHHHHHCC
SPMLVESGYPNTWYYIYHFTHGHEKSIQKNLIVHFDDNGNLTNMEGDFPMSDSFFEKL
CCEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCEECCCCCCCCCHHHHHCC
>Mature Secondary Structure
MQFKKWIIALPLAVGLLGGCSLLEPLVYRIDIAQGNYVEQEAVDKLRFGMTKQQVQFVMG
CCHHHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCCEECHHHHHHHHHCCCHHHHHHHCC
SPMLVESGYPNTWYYIYHFTHGHEKSIQKNLIVHFDDNGNLTNMEGDFPMSDSFFEKL
CCEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCEECCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA