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The map label for this gene is recN [H]

Identifier: 59712605

GI number: 59712605

Start: 2233522

End: 2235189

Strand: Direct

Name: recN [H]

Synonym: VF_1998

Alternate gene names: 59712605

Gene position: 2233522-2235189 (Clockwise)

Preceding gene: 59712604

Following gene: 59712606

Centisome position: 77.08

GC content: 39.81

Gene sequence:

>1668_bases
ATGTTGGCACATATTAAAATTACTCATTTTGCTATCGTAAAATCTTTAGAGCTTGATCTAACCAAAGGCATGACAACCAT
CACTGGTGAGACTGGTGCAGGTAAATCCATCGCCATTGATGCCCTTGGTTTGTGTCTTGGTGATCGCGCAGAAGCTTCCA
TGGTTCGCCAAGGGGAAGAAAAAGCGGAAATCACCGTTCTTTTTACTCTAGAAAACAACATTAATGCCAAACGTTGGTTA
GAAGATAACGAACTTTATGATGGCAATGATTGTATTTTACGTCGTGTCATTACCAAAGAAGGCCGCTCGCGTGGCTTTAT
CAATGGTAGCCCTGTCCCTGCAGCTCAACTAAAAACATTAGGCCATTTGTTGATTAACATTCATGGCCAACATGCTCACC
ATGAACTAATGAAACCTGAATACCAACTCAATATGTTGGATCAATATGCAGGACATGTTTCATTATTAAATAAAACTCGC
AGCCGTTATCAAGCATGGCGACAAGCTGACAATGCGTTAAAACAAATGATTAAGCATAGTCAACAAAACGAAGCTCAAAA
ACAGCTGATCGAATATCAAATAAAAGAGCTGAATGAGCTTGCATTAGGTGAAGAAGAATTCACTCAATTAGAAGAAGACC
ATAAGCGCCTTTCTAATTCTGGTGAATTAGTTGAATGCAGCCAACAAGCCATCTCTATTTTGTATGAAAATGATGAAGTG
AATGCGCTTCAATTACTGCAATATGCCAATAATCATATTCAACAATTAGGTCAATTAGATCCTCAACTTGCTCCTTTATC
TGAAATGTTGAATGAAGCCATGATTCAGGTTGAAGAAGCCAATCATGAAATCAAAAACTACCTTGATAATATTGATGTTG
ATCCTGAGCAAATTGCTTTTGTTGAAGAGCGCTTTAGTCGAGTAATGTCGATGGCAAAAAAACACCATGTTCTTGCTGAC
GAATTATATGAACATCACCAACAGTTATTAGCAGAATATGATCGCCTTGATTGCTCTGATGAAAAACGTGAACAGCGTGA
ACAAGAAGTAGAAGAACTAAAACAACACTTCTTAGAAGCGGCACATAAGTTAACGAAAAGTCGTCAACGTTACGCAAAAG
AATTAAACAACAAAATTACCGACAGCATGCAAACTTTAAGCATGGAAAAAGCGGTATTCGATATTCAAATTGAAAGTGAT
GCACATACGAAGATTTCACCTCTCGGCATCGATACCTTGTGCTTTAAGGTATCCACAAACCCGGGGCAACCACTGCAACC
AATTGCTAAAGTGGCTTCAGGTGGTGAGTTATCACGTATTTCACTGGCTATCCAAGTGATTACGGCGCAAAAAGTTGATA
CACCAAGCCTGATTTTCGATGAGGTTGATGTAGGTATCAGCGGACCGACTGCGGCAGTCGTAGGTAAAATGCTACGCACT
CTAGGTGAATCAACTCAAGTGTTGTGCGTAACTCACTTACCTCAAGTTGCAGGTTGTGGCCATAACCAACTGTTTGTTGC
TAAGCATACAAAATCAGGTAAAACTGAAACCCAAATGCGAGCATTAAACTTAGAAGAACGTGTAGAAGAGCTAGCTCGCT
TACTTGGCGGAACTCAAATTACTGCTCACACATTAGCCAACGCAAAAGAATTACTGAACGCAGCTTAA

Upstream 100 bases:

>100_bases
GTCACAAAAAATTTAAATTCACTTTACTGTATAAAGAAACAGTATATACTGTGTCTATATACAGTGTTTTTCGTATTTTA
AATTTCGCAGAGACTGACTT

Downstream 100 bases:

>100_bases
TATCTACAGCATCCGTTTATCGACTCAAAAAGCCAATATTATTTTATTAATATTGGCTTTTTTAATGAAAGTAATCACTA
AAATCGAAAGAATCAATGCA

Product: recombination and repair protein

Products: NA

Alternate protein names: Recombination protein N [H]

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MLAHIKITHFAIVKSLELDLTKGMTTITGETGAGKSIAIDALGLCLGDRAEASMVRQGEEKAEITVLFTLENNINAKRWL
EDNELYDGNDCILRRVITKEGRSRGFINGSPVPAAQLKTLGHLLINIHGQHAHHELMKPEYQLNMLDQYAGHVSLLNKTR
SRYQAWRQADNALKQMIKHSQQNEAQKQLIEYQIKELNELALGEEEFTQLEEDHKRLSNSGELVECSQQAISILYENDEV
NALQLLQYANNHIQQLGQLDPQLAPLSEMLNEAMIQVEEANHEIKNYLDNIDVDPEQIAFVEERFSRVMSMAKKHHVLAD
ELYEHHQQLLAEYDRLDCSDEKREQREQEVEELKQHFLEAAHKLTKSRQRYAKELNNKITDSMQTLSMEKAVFDIQIESD
AHTKISPLGIDTLCFKVSTNPGQPLQPIAKVASGGELSRISLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKMLRT
LGESTQVLCVTHLPQVAGCGHNQLFVAKHTKSGKTETQMRALNLEERVEELARLLGGTQITAHTLANAKELLNAA

Sequences:

>Translated_555_residues
MLAHIKITHFAIVKSLELDLTKGMTTITGETGAGKSIAIDALGLCLGDRAEASMVRQGEEKAEITVLFTLENNINAKRWL
EDNELYDGNDCILRRVITKEGRSRGFINGSPVPAAQLKTLGHLLINIHGQHAHHELMKPEYQLNMLDQYAGHVSLLNKTR
SRYQAWRQADNALKQMIKHSQQNEAQKQLIEYQIKELNELALGEEEFTQLEEDHKRLSNSGELVECSQQAISILYENDEV
NALQLLQYANNHIQQLGQLDPQLAPLSEMLNEAMIQVEEANHEIKNYLDNIDVDPEQIAFVEERFSRVMSMAKKHHVLAD
ELYEHHQQLLAEYDRLDCSDEKREQREQEVEELKQHFLEAAHKLTKSRQRYAKELNNKITDSMQTLSMEKAVFDIQIESD
AHTKISPLGIDTLCFKVSTNPGQPLQPIAKVASGGELSRISLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKMLRT
LGESTQVLCVTHLPQVAGCGHNQLFVAKHTKSGKTETQMRALNLEERVEELARLLGGTQITAHTLANAKELLNAA
>Mature_555_residues
MLAHIKITHFAIVKSLELDLTKGMTTITGETGAGKSIAIDALGLCLGDRAEASMVRQGEEKAEITVLFTLENNINAKRWL
EDNELYDGNDCILRRVITKEGRSRGFINGSPVPAAQLKTLGHLLINIHGQHAHHELMKPEYQLNMLDQYAGHVSLLNKTR
SRYQAWRQADNALKQMIKHSQQNEAQKQLIEYQIKELNELALGEEEFTQLEEDHKRLSNSGELVECSQQAISILYENDEV
NALQLLQYANNHIQQLGQLDPQLAPLSEMLNEAMIQVEEANHEIKNYLDNIDVDPEQIAFVEERFSRVMSMAKKHHVLAD
ELYEHHQQLLAEYDRLDCSDEKREQREQEVEELKQHFLEAAHKLTKSRQRYAKELNNKITDSMQTLSMEKAVFDIQIESD
AHTKISPLGIDTLCFKVSTNPGQPLQPIAKVASGGELSRISLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKMLRT
LGESTQVLCVTHLPQVAGCGHNQLFVAKHTKSGKTETQMRALNLEERVEELARLLGGTQITAHTLANAKELLNAA

Specific function: May be involved in recombinational repair of damaged DNA [H]

COG id: COG0497

COG function: function code L; ATPase involved in DNA repair

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recN family [H]

Homologues:

Organism=Escherichia coli, GI48994901, Length=554, Percent_Identity=53.7906137184115, Blast_Score=590, Evalue=1e-170,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004604
- InterPro:   IPR003395 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 62271; Mature: 62271

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAHIKITHFAIVKSLELDLTKGMTTITGETGAGKSIAIDALGLCLGDRAEASMVRQGEE
CCEEEEEHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEHHHHHHHHCCCHHHHHHHCCCC
KAEITVLFTLENNINAKRWLEDNELYDGNDCILRRVITKEGRSRGFINGSPVPAAQLKTL
CCEEEEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
GHLLINIHGQHAHHELMKPEYQLNMLDQYAGHVSLLNKTRSRYQAWRQADNALKQMIKHS
HHHHEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQNEAQKQLIEYQIKELNELALGEEEFTQLEEDHKRLSNSGELVECSQQAISILYENDEV
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
NALQLLQYANNHIQQLGQLDPQLAPLSEMLNEAMIQVEEANHEIKNYLDNIDVDPEQIAF
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VEERFSRVMSMAKKHHVLADELYEHHQQLLAEYDRLDCSDEKREQREQEVEELKQHFLEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AHKLTKSRQRYAKELNNKITDSMQTLSMEKAVFDIQIESDAHTKISPLGIDTLCFKVSTN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEECCCCCEEEEEEEECC
PGQPLQPIAKVASGGELSRISLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKMLRT
CCCCHHHHHHHHCCCCCHHHHHEEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
LGESTQVLCVTHLPQVAGCGHNQLFVAKHTKSGKTETQMRALNLEERVEELARLLGGTQI
HCCCCEEEEEECCHHHHCCCCCEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHHCCCCC
TAHTLANAKELLNAA
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MLAHIKITHFAIVKSLELDLTKGMTTITGETGAGKSIAIDALGLCLGDRAEASMVRQGEE
CCEEEEEHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEHHHHHHHHCCCHHHHHHHCCCC
KAEITVLFTLENNINAKRWLEDNELYDGNDCILRRVITKEGRSRGFINGSPVPAAQLKTL
CCEEEEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
GHLLINIHGQHAHHELMKPEYQLNMLDQYAGHVSLLNKTRSRYQAWRQADNALKQMIKHS
HHHHEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQNEAQKQLIEYQIKELNELALGEEEFTQLEEDHKRLSNSGELVECSQQAISILYENDEV
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
NALQLLQYANNHIQQLGQLDPQLAPLSEMLNEAMIQVEEANHEIKNYLDNIDVDPEQIAF
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VEERFSRVMSMAKKHHVLADELYEHHQQLLAEYDRLDCSDEKREQREQEVEELKQHFLEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AHKLTKSRQRYAKELNNKITDSMQTLSMEKAVFDIQIESDAHTKISPLGIDTLCFKVSTN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEECCCCCEEEEEEEECC
PGQPLQPIAKVASGGELSRISLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKMLRT
CCCCHHHHHHHHCCCCCHHHHHEEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
LGESTQVLCVTHLPQVAGCGHNQLFVAKHTKSGKTETQMRALNLEERVEELARLLGGTQI
HCCCCEEEEEECCHHHHCCCCCEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHHCCCCC
TAHTLANAKELLNAA
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA