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The map label for this gene is ybbO [H]

Identifier: 59711391

GI number: 59711391

Start: 857657

End: 858484

Strand: Reverse

Name: ybbO [H]

Synonym: VF_0784

Alternate gene names: 59711391

Gene position: 858484-857657 (Counterclockwise)

Preceding gene: 59711392

Following gene: 59711390

Centisome position: 29.63

GC content: 37.56

Gene sequence:

>828_bases
ATGAAGCGTTCTATATTTATAACTGGCTGCTCTACAGGTATCGGATATACCGCAGCTCACCAATTACAGCAACACGGCTT
TAATGTTATCGCCTCATGTAGAAAAGAAGAAGATGTTATTCGACTTCAGAAGGAAGGGCTCACTTGCTTACAACTCGATT
ATAATGATCCTCAGAGCGTCAGTGATGCGGTGCACAAAATAAAAGCACTAACTGATGGAAAATTATACGCTTTATTTAAT
AATGGGGCTTATGGACAGGCAGGTGCACTCGAAGATCTACCTCGTGATGCCTTAAAAGAACAGTTCGAAGCTAATTTCTT
TGGTTGGCATCAGTTAGTAACAGAATTACTCCCAATAATGAGAGAACAAAATCAAGGACGTATCATTCAAAACAGCTCTG
TTTTAGGCATTGTTGCCATGAAATACCGTGGAGCTTATAACGCATCAAAATTTGCTATTGAAGGTTGGACAGATACGTTA
CGTCTAGAACTATCAGATACAAACATTAAAGTCTGCTTAATTGAACCTGGGCCAATAGAAACCGAATTCCGCTCTAACGC
ATTGAAAGCATTTAATAAATGGATAGATGTAGAAAATAGCCCTCATAAGGAAAAATACCTTATTCAGCAACAAAGACTCG
AAAAAGAAAAGTCAGGTAGTGCGTTTATTTTACCATCAACCGCCGTCATTTCCCCATTACTACACGCCTTAAATTCCACA
AAACCAAAAGTAAGGTATCGAGTTACCTTTCCAACGTATTTATTTGCATTTCTTAAACGTATTTTACCAACAAAAATCCT
CGATAAGATCTTAAATAAGAGTGATTAA

Upstream 100 bases:

>100_bases
TCTATAACCCCTACTTTATACTGTTTTCTATTGTACTTATGTCAGCGAAAATAAGGTCTATGTACTTATTTGGTTTGCTA
ATAAACATTTATAGGGATTT

Downstream 100 bases:

>100_bases
TGTAACTTTATACCGCCACCACTGTGTAATTTTTAATAAATACGAGAAAAAGATAAAAATGTAATATTAGTGTCATAAAG
CAATCGTATATTTAATACTA

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MKRSIFITGCSTGIGYTAAHQLQQHGFNVIASCRKEEDVIRLQKEGLTCLQLDYNDPQSVSDAVHKIKALTDGKLYALFN
NGAYGQAGALEDLPRDALKEQFEANFFGWHQLVTELLPIMREQNQGRIIQNSSVLGIVAMKYRGAYNASKFAIEGWTDTL
RLELSDTNIKVCLIEPGPIETEFRSNALKAFNKWIDVENSPHKEKYLIQQQRLEKEKSGSAFILPSTAVISPLLHALNST
KPKVRYRVTFPTYLFAFLKRILPTKILDKILNKSD

Sequences:

>Translated_275_residues
MKRSIFITGCSTGIGYTAAHQLQQHGFNVIASCRKEEDVIRLQKEGLTCLQLDYNDPQSVSDAVHKIKALTDGKLYALFN
NGAYGQAGALEDLPRDALKEQFEANFFGWHQLVTELLPIMREQNQGRIIQNSSVLGIVAMKYRGAYNASKFAIEGWTDTL
RLELSDTNIKVCLIEPGPIETEFRSNALKAFNKWIDVENSPHKEKYLIQQQRLEKEKSGSAFILPSTAVISPLLHALNST
KPKVRYRVTFPTYLFAFLKRILPTKILDKILNKSD
>Mature_275_residues
MKRSIFITGCSTGIGYTAAHQLQQHGFNVIASCRKEEDVIRLQKEGLTCLQLDYNDPQSVSDAVHKIKALTDGKLYALFN
NGAYGQAGALEDLPRDALKEQFEANFFGWHQLVTELLPIMREQNQGRIIQNSSVLGIVAMKYRGAYNASKFAIEGWTDTL
RLELSDTNIKVCLIEPGPIETEFRSNALKAFNKWIDVENSPHKEKYLIQQQRLEKEKSGSAFILPSTAVISPLLHALNST
KPKVRYRVTFPTYLFAFLKRILPTKILDKILNKSD

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=253, Percent_Identity=32.0158102766798, Blast_Score=121, Evalue=8e-28,
Organism=Homo sapiens, GI150247226, Length=283, Percent_Identity=29.6819787985866, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI40548397, Length=284, Percent_Identity=30.6338028169014, Blast_Score=114, Evalue=8e-26,
Organism=Homo sapiens, GI214010158, Length=284, Percent_Identity=30.6338028169014, Blast_Score=114, Evalue=8e-26,
Organism=Homo sapiens, GI214010156, Length=284, Percent_Identity=30.6338028169014, Blast_Score=114, Evalue=8e-26,
Organism=Homo sapiens, GI22758144, Length=284, Percent_Identity=30.6338028169014, Blast_Score=114, Evalue=8e-26,
Organism=Homo sapiens, GI50726952, Length=283, Percent_Identity=32.5088339222615, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI22507405, Length=284, Percent_Identity=29.9295774647887, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI223718074, Length=265, Percent_Identity=30.5660377358491, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI19743808, Length=286, Percent_Identity=28.6713286713287, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI4504503, Length=290, Percent_Identity=29.3103448275862, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI44680136, Length=286, Percent_Identity=26.9230769230769, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI44680133, Length=286, Percent_Identity=26.9230769230769, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI17738292, Length=286, Percent_Identity=26.9230769230769, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI119392083, Length=296, Percent_Identity=28.0405405405405, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=31.7948717948718, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=30.3030303030303, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI32455239, Length=214, Percent_Identity=27.5700934579439, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI5031765, Length=214, Percent_Identity=27.5700934579439, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI5031737, Length=187, Percent_Identity=29.9465240641711, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=30.4812834224599, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI32483357, Length=220, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI1786701, Length=271, Percent_Identity=43.5424354243542, Blast_Score=237, Evalue=6e-64,
Organism=Escherichia coli, GI87082100, Length=196, Percent_Identity=30.6122448979592, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787335, Length=184, Percent_Identity=27.7173913043478, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=213, Percent_Identity=30.5164319248826, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17557780, Length=293, Percent_Identity=28.6689419795222, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI193210355, Length=273, Percent_Identity=29.6703296703297, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17570069, Length=205, Percent_Identity=32.1951219512195, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI115534660, Length=281, Percent_Identity=26.6903914590747, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17507613, Length=292, Percent_Identity=23.972602739726, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI32563809, Length=292, Percent_Identity=23.972602739726, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17560676, Length=194, Percent_Identity=30.4123711340206, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322067, Length=278, Percent_Identity=26.2589928057554, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6323882, Length=213, Percent_Identity=28.6384976525822, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=32.1428571428571, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24651139, Length=191, Percent_Identity=32.9842931937173, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI21355319, Length=188, Percent_Identity=29.7872340425532, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24580925, Length=296, Percent_Identity=23.9864864864865, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI19922066, Length=263, Percent_Identity=25.0950570342205, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648944, Length=191, Percent_Identity=30.3664921465969, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31078; Mature: 31078

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSIFITGCSTGIGYTAAHQLQQHGFNVIASCRKEEDVIRLQKEGLTCLQLDYNDPQSV
CCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCHHH
SDAVHKIKALTDGKLYALFNNGAYGQAGALEDLPRDALKEQFEANFFGWHQLVTELLPIM
HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
REQNQGRIIQNSSVLGIVAMKYRGAYNASKFAIEGWTDTLRLELSDTNIKVCLIEPGPIE
HCCCCCCEEECCCEEEEEEEEECCCCCCCEEEEECCCEEEEEEEECCCEEEEEECCCCCC
TEFRSNALKAFNKWIDVENSPHKEKYLIQQQRLEKEKSGSAFILPSTAVISPLLHALNST
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCC
KPKVRYRVTFPTYLFAFLKRILPTKILDKILNKSD
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKRSIFITGCSTGIGYTAAHQLQQHGFNVIASCRKEEDVIRLQKEGLTCLQLDYNDPQSV
CCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCHHH
SDAVHKIKALTDGKLYALFNNGAYGQAGALEDLPRDALKEQFEANFFGWHQLVTELLPIM
HHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
REQNQGRIIQNSSVLGIVAMKYRGAYNASKFAIEGWTDTLRLELSDTNIKVCLIEPGPIE
HCCCCCCEEECCCEEEEEEEEECCCCCCCEEEEECCCEEEEEEEECCCEEEEEECCCCCC
TEFRSNALKAFNKWIDVENSPHKEKYLIQQQRLEKEKSGSAFILPSTAVISPLLHALNST
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCC
KPKVRYRVTFPTYLFAFLKRILPTKILDKILNKSD
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]