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The map label for this gene is ydaL [H]

Identifier: 59711386

GI number: 59711386

Start: 851518

End: 852102

Strand: Reverse

Name: ydaL [H]

Synonym: VF_0779

Alternate gene names: 59711386

Gene position: 852102-851518 (Counterclockwise)

Preceding gene: 59711387

Following gene: 59711384

Centisome position: 29.41

GC content: 39.15

Gene sequence:

>585_bases
ATGCCTCATACAGATGAATTTTCACTATTCCAAGAGATGATGGGAGATGTAAAACCCATTAAACAAGATATAGTGACACC
ACTAACCTCTCCCCATAAAGCAACAGAATCTCAATTAGCACGTAAAGAGGCAGCGCAAGCACTATCAGAAACGGATCCAG
ATTTTCTGTCTTTAGATAATGCACCATTATTACAACCTGACGATATCATTGAGTTTAAACGCGATGGCGTTCAAGATGGC
GTATATCGAAAAGTTCGTCTCGGTAAATATGAAATTCAAGCACGTTTAGACTTACACAAACGCACATTAAAACAAGCTAG
AGATGAAGTGCTTCACTTTTTAAAACAATGCCAGAAAATGGATGTACGCTTTGCTGTTATCGTTCATGGTAAAGGTGCAA
AATCCAACCCTCCGGCATTAGTTAAAAGTCATGTTGCTCAATGGCTTCCACAAATAAAAGAAGTGATGTGCGTACATTCA
GCTAAAGCACAACATGGTGGCTCGGGAGCGGTATATATCCTATTAAGGAAAAGCGCAGAAAAGAAATTAGAGAACAGAGA
AAAGCATCAAAAACGCAGTGCATAA

Upstream 100 bases:

>100_bases
AATTAATCGAATTCATAAATAAATCATCAAAATTTGCTTAGAATTCATCAATTACATCACTATAATCCAAATAAATATAT
GATCGCTCTAAGGATTATTT

Downstream 100 bases:

>100_bases
AAAAAGCCTCCAAATATCTGGAGGCTTTTTATTAACCAGTAAACTTACTGTTATTTGTAAACAATTTCACCACGCGGAGC
AAATGTATTTACGTCGATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MPHTDEFSLFQEMMGDVKPIKQDIVTPLTSPHKATESQLARKEAAQALSETDPDFLSLDNAPLLQPDDIIEFKRDGVQDG
VYRKVRLGKYEIQARLDLHKRTLKQARDEVLHFLKQCQKMDVRFAVIVHGKGAKSNPPALVKSHVAQWLPQIKEVMCVHS
AKAQHGGSGAVYILLRKSAEKKLENREKHQKRSA

Sequences:

>Translated_194_residues
MPHTDEFSLFQEMMGDVKPIKQDIVTPLTSPHKATESQLARKEAAQALSETDPDFLSLDNAPLLQPDDIIEFKRDGVQDG
VYRKVRLGKYEIQARLDLHKRTLKQARDEVLHFLKQCQKMDVRFAVIVHGKGAKSNPPALVKSHVAQWLPQIKEVMCVHS
AKAQHGGSGAVYILLRKSAEKKLENREKHQKRSA
>Mature_193_residues
PHTDEFSLFQEMMGDVKPIKQDIVTPLTSPHKATESQLARKEAAQALSETDPDFLSLDNAPLLQPDDIIEFKRDGVQDGV
YRKVRLGKYEIQARLDLHKRTLKQARDEVLHFLKQCQKMDVRFAVIVHGKGAKSNPPALVKSHVAQWLPQIKEVMCVHSA
KAQHGGSGAVYILLRKSAEKKLENREKHQKRSA

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=197, Percent_Identity=38.0710659898477, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788671, Length=168, Percent_Identity=27.9761904761905, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 21966; Mature: 21834

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHTDEFSLFQEMMGDVKPIKQDIVTPLTSPHKATESQLARKEAAQALSETDPDFLSLDN
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCC
APLLQPDDIIEFKRDGVQDGVYRKVRLGKYEIQARLDLHKRTLKQARDEVLHFLKQCQKM
CCCCCCHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DVRFAVIVHGKGAKSNPPALVKSHVAQWLPQIKEVMCVHSAKAQHGGSGAVYILLRKSAE
CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHH
KKLENREKHQKRSA
HHHHHHHHHHHCCC
>Mature Secondary Structure 
PHTDEFSLFQEMMGDVKPIKQDIVTPLTSPHKATESQLARKEAAQALSETDPDFLSLDN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCC
APLLQPDDIIEFKRDGVQDGVYRKVRLGKYEIQARLDLHKRTLKQARDEVLHFLKQCQKM
CCCCCCHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DVRFAVIVHGKGAKSNPPALVKSHVAQWLPQIKEVMCVHSAKAQHGGSGAVYILLRKSAE
CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHH
KKLENREKHQKRSA
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]