Click here to switch to the map view.

The map label for this gene is yfeN [H]

Identifier: 59711326

GI number: 59711326

Start: 786156

End: 786929

Strand: Reverse

Name: yfeN [H]

Synonym: VF_0719

Alternate gene names: 59711326

Gene position: 786929-786156 (Counterclockwise)

Preceding gene: 59711327

Following gene: 59711325

Centisome position: 27.16

GC content: 38.24

Gene sequence:

>774_bases
ATGCGTAAATCCCTTTTAGCTCTATCTGTTCTTGCTACAACTGTTGCTATTCCTGCTCAAGCTGAATACCTATATGGTTT
TGCAAACATGAGTGTGAACTACTTAGATTGGTCAAATGACACAACAGATCGTTCTGGTAAAGAAGACTTTAGCTACCTAG
AGTTAGAAGGTGGTTCAGGTTATTCTTGGGGTGAATTATACGGATTTGCTGATTTTGAAAACATGGAAAATGGCTTTGAT
GAAACTCGAACGTCTATCAAAGGTAGTGTTGCATGGAAAACTGGTCTAAAAGAATTACGTTTATACGGTCAACTTTATAA
TACAAACTCTGCTGGTTTCACAGCTCAAAATACCGTTACGGGTGTTTCATATAACTTCAGCGGTGATAACTGGTACTTTA
ACCCTTGGGTTGGCTTCCATCATACGATTACAACAAATTCATTCCAATTTGACAAAAATGGTGATCAATTAGCAGCTAAG
TCATTCAGTGGTATGAACGGTGGTATGTTTGGTTGGGCATTAGGTTATAACTTTAAACTAGGTAACCAAAGCTTCTCTCT
ATCAAACTGGCACGAAACTGAATTTGCTCGTACTGATGATTATGTTGCAGTTTCTGGTGAAACAGATGATCTATCAATGA
ACGGTGCCGTAGCTCTTTGGTGGAATGCGACTGATGCTGTAACAACTGGTATCCAATACCGCTACGCTGATAATAAACTA
GGTCAAACAAAGCTTGATCAAGCTGTAATTTACACAGTGAAATATAACTTCTAA

Upstream 100 bases:

>100_bases
TTAAAAAAGTGAACTTTCTCTATATTATCTGCGTCATTCGAGAACGATACATATCGTCCTTCTATCATTTTTTGTAATAC
ATAACTATAGAGATACCATT

Downstream 100 bases:

>100_bases
TCTAACTTAGAATACCTATTTTACTAAGGCGCTCACTATGAGCGCCTTTGTTTTTTGTAGCAAACCAATTACACTGCTTT
CATTATTTCTTCTTAATGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MRKSLLALSVLATTVAIPAQAEYLYGFANMSVNYLDWSNDTTDRSGKEDFSYLELEGGSGYSWGELYGFADFENMENGFD
ETRTSIKGSVAWKTGLKELRLYGQLYNTNSAGFTAQNTVTGVSYNFSGDNWYFNPWVGFHHTITTNSFQFDKNGDQLAAK
SFSGMNGGMFGWALGYNFKLGNQSFSLSNWHETEFARTDDYVAVSGETDDLSMNGAVALWWNATDAVTTGIQYRYADNKL
GQTKLDQAVIYTVKYNF

Sequences:

>Translated_257_residues
MRKSLLALSVLATTVAIPAQAEYLYGFANMSVNYLDWSNDTTDRSGKEDFSYLELEGGSGYSWGELYGFADFENMENGFD
ETRTSIKGSVAWKTGLKELRLYGQLYNTNSAGFTAQNTVTGVSYNFSGDNWYFNPWVGFHHTITTNSFQFDKNGDQLAAK
SFSGMNGGMFGWALGYNFKLGNQSFSLSNWHETEFARTDDYVAVSGETDDLSMNGAVALWWNATDAVTTGIQYRYADNKL
GQTKLDQAVIYTVKYNF
>Mature_257_residues
MRKSLLALSVLATTVAIPAQAEYLYGFANMSVNYLDWSNDTTDRSGKEDFSYLELEGGSGYSWGELYGFADFENMENGFD
ETRTSIKGSVAWKTGLKELRLYGQLYNTNSAGFTAQNTVTGVSYNFSGDNWYFNPWVGFHHTITTNSFQFDKNGDQLAAK
SFSGMNGGMFGWALGYNFKLGNQSFSLSNWHETEFARTDDYVAVSGETDDLSMNGAVALWWNATDAVTTGIQYRYADNKL
GQTKLDQAVIYTVKYNF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To V.parahaemolyticus ompK [H]

Homologues:

Organism=Escherichia coli, GI1788747, Length=256, Percent_Identity=41.796875, Blast_Score=180, Evalue=7e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018013 [H]

Pfam domain/function: PF03502 Channel_Tsx [H]

EC number: NA

Molecular weight: Translated: 28747; Mature: 28747

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSLLALSVLATTVAIPAQAEYLYGFANMSVNYLDWSNDTTDRSGKEDFSYLELEGGSG
CCCHHHHHHHHHHHHCCCCCHHEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEECCCC
YSWGELYGFADFENMENGFDETRTSIKGSVAWKTGLKELRLYGQLYNTNSAGFTAQNTVT
CCHHHEEEEECHHHHHCCHHHHHHHHCCEEEHHHHHHHHEEEEEEECCCCCCEEECCEEE
GVSYNFSGDNWYFNPWVGFHHTITTNSFQFDKNGDQLAAKSFSGMNGGMFGWALGYNFKL
EEEEEECCCCEEECCCCCEEEEEECCEEEECCCCCHHHHHHCCCCCCCEEEEEEEEEEEE
GNQSFSLSNWHETEFARTDDYVAVSGETDDLSMNGAVALWWNATDAVTTGIQYRYADNKL
CCCEEECCCCCCCCCCCCCCEEEEECCCCCEECCCEEEEEECCCHHHHCCEEEEECCCCC
GQTKLDQAVIYTVKYNF
CCCCCCCEEEEEEEECC
>Mature Secondary Structure
MRKSLLALSVLATTVAIPAQAEYLYGFANMSVNYLDWSNDTTDRSGKEDFSYLELEGGSG
CCCHHHHHHHHHHHHCCCCCHHEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEECCCC
YSWGELYGFADFENMENGFDETRTSIKGSVAWKTGLKELRLYGQLYNTNSAGFTAQNTVT
CCHHHEEEEECHHHHHCCHHHHHHHHCCEEEHHHHHHHHEEEEEEECCCCCCEEECCEEE
GVSYNFSGDNWYFNPWVGFHHTITTNSFQFDKNGDQLAAKSFSGMNGGMFGWALGYNFKL
EEEEEECCCCEEECCCCCEEEEEECCEEEECCCCCHHHHHHCCCCCCCEEEEEEEEEEEE
GNQSFSLSNWHETEFARTDDYVAVSGETDDLSMNGAVALWWNATDAVTTGIQYRYADNKL
CCCEEECCCCCCCCCCCCCCEEEEECCCCCEECCCEEEEEECCCHHHHCCEEEEECCCCC
GQTKLDQAVIYTVKYNF
CCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7559336; 9205837; 9278503 [H]