Click here to switch to the map view.

The map label for this gene is xseB [H]

Identifier: 59711320

GI number: 59711320

Start: 780657

End: 780899

Strand: Reverse

Name: xseB [H]

Synonym: VF_0713

Alternate gene names: 59711320

Gene position: 780899-780657 (Counterclockwise)

Preceding gene: 59711324

Following gene: 59711319

Centisome position: 26.95

GC content: 39.51

Gene sequence:

>243_bases
ATGGCTGTAAAAAAACCTGAAAATTTATCGTTTGAAGCGGCAATAGAAGAACTGGATTCTGTCGTCAATCAATTAGAAAG
TGGCGATTTGCCTCTTGAAGATGCATTGAAGAAGTTTGAACGAGGCATTTCTCTAGCACGAGCTGGACAAGAAAAACTAA
CTCAAGCAGAACAACGAGTAGAAATTCTTCTTCAAGCTGACGATAACGCAGAACTAACACCTTTTGATGGACAAGATGAC
TGA

Upstream 100 bases:

>100_bases
TCACTAAATTTTACTTTTATACGTGACTTTCTCACCTGTTCAATTGACCCTCACCTCTCTCTGAGTTACCTTTCTTGGAT
CATTTTAAGAGTGAATCATT

Downstream 100 bases:

>100_bases
TTCACTAAAACAACAACTTACATTTTTTCAAAATAGAAACATTGAACAATTAAATCAGTGGCTTGAAAAAATCGAAATTC
AGCAACAACCACTAACTGAA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MAVKKPENLSFEAAIEELDSVVNQLESGDLPLEDALKKFERGISLARAGQEKLTQAEQRVEILLQADDNAELTPFDGQDD

Sequences:

>Translated_80_residues
MAVKKPENLSFEAAIEELDSVVNQLESGDLPLEDALKKFERGISLARAGQEKLTQAEQRVEILLQADDNAELTPFDGQDD
>Mature_79_residues
AVKKPENLSFEAAIEELDSVVNQLESGDLPLEDALKKFERGISLARAGQEKLTQAEQRVEILLQADDNAELTPFDGQDD

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

Organism=Escherichia coli, GI1786624, Length=66, Percent_Identity=65.1515151515152, Blast_Score=88, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 8843; Mature: 8712

Theoretical pI: Translated: 3.91; Mature: 3.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVKKPENLSFEAAIEELDSVVNQLESGDLPLEDALKKFERGISLARAGQEKLTQAEQRV
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EILLQADDNAELTPFDGQDD
HHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVKKPENLSFEAAIEELDSVVNQLESGDLPLEDALKKFERGISLARAGQEKLTQAEQRV
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EILLQADDNAELTPFDGQDD
HHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA