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The map label for this gene is surf1

Identifier: 58617599

GI number: 58617599

Start: 1392529

End: 1393170

Strand: Reverse

Name: surf1

Synonym: ERGA_CDS_08720

Alternate gene names: NA

Gene position: 1393170-1392529 (Counterclockwise)

Preceding gene: 58617601

Following gene: 58617597

Centisome position: 92.88

GC content: 29.44

Gene sequence:

>642_bases
ATGTGGCGTATAAAATTTATTTTTGTTTTTGCTATTCCATTTTCCATTATGATAACACTTGGTACATGGCAGGTGTTTAG
GTTAAAAGAAAAGAATATTATTATTCATAATATGCAAGCTTTACCTGTAAAATTATCAAGTGATAATCTTGTATCACAAC
GTTATAATCATGTAATTGCAAATGGATCTTTTGATAATGATCATAAGTTTTTTGTTTTTGCTGGTACTTTAGGTTATTAT
GTATTACAGCCATTTCACTTGAATGATGGTAGGTATATATTAATAAATAAAGGAACAATAGCTGATAGAAAAAAGGAACT
TAAGCTTTTTGATAATGACCAACGTAGTGTAACCGGTATTCTCTATTGTGATCATAATAAAAAAGTTGGATGGTTTGTAA
AAAATGATATTGATGATAATCTGTGGTTTTGGTTTGATATAGAAGCTATGATCAAAACAGTAAATATTCCATTGGAAAGT
TGTATAATATGGGCAAATGATACAGTAGACTCTAATGGTATTACAATAAATGTACCACTGAAGGTCAGAAATGATCATCT
AGAATATATAATTACTTGGTATGTACTTGCATTAGTGTGGTTGGTGGGATATCTGTATTGGTGTCGTAGTAAAACGACCT
AA

Upstream 100 bases:

>100_bases
ATTAAAATGTATATATAACAAAAGTGTTTAAATTTTACATACTATCTATGCCTATTATAATGTATGTTTTATAAGTTATG
GAGTTATATAAAAGTAATAG

Downstream 100 bases:

>100_bases
AAATTTTTGGTATATAAGAATAAGTATATGTTGGGATGATATAGGTTATCCAGTAATTTTTAATGATGTTAATTAGACTA
AAGCTCAGAAATAATTGTCT

Product: Surf1-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MWRIKFIFVFAIPFSIMITLGTWQVFRLKEKNIIIHNMQALPVKLSSDNLVSQRYNHVIANGSFDNDHKFFVFAGTLGYY
VLQPFHLNDGRYILINKGTIADRKKELKLFDNDQRSVTGILYCDHNKKVGWFVKNDIDDNLWFWFDIEAMIKTVNIPLES
CIIWANDTVDSNGITINVPLKVRNDHLEYIITWYVLALVWLVGYLYWCRSKTT

Sequences:

>Translated_213_residues
MWRIKFIFVFAIPFSIMITLGTWQVFRLKEKNIIIHNMQALPVKLSSDNLVSQRYNHVIANGSFDNDHKFFVFAGTLGYY
VLQPFHLNDGRYILINKGTIADRKKELKLFDNDQRSVTGILYCDHNKKVGWFVKNDIDDNLWFWFDIEAMIKTVNIPLES
CIIWANDTVDSNGITINVPLKVRNDHLEYIITWYVLALVWLVGYLYWCRSKTT
>Mature_213_residues
MWRIKFIFVFAIPFSIMITLGTWQVFRLKEKNIIIHNMQALPVKLSSDNLVSQRYNHVIANGSFDNDHKFFVFAGTLGYY
VLQPFHLNDGRYILINKGTIADRKKELKLFDNDQRSVTGILYCDHNKKVGWFVKNDIDDNLWFWFDIEAMIKTVNIPLES
CIIWANDTVDSNGITINVPLKVRNDHLEYIITWYVLALVWLVGYLYWCRSKTT

Specific function: Unknown

COG id: COG3346

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SURF1 family [H]

Homologues:

Organism=Homo sapiens, GI4507319, Length=210, Percent_Identity=29.0476190476191, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17553856, Length=240, Percent_Identity=26.25, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002994 [H]

Pfam domain/function: PF02104 SURF1 [H]

EC number: NA

Molecular weight: Translated: 25076; Mature: 25076

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS50895 SURF1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRIKFIFVFAIPFSIMITLGTWQVFRLKEKNIIIHNMQALPVKLSSDNLVSQRYNHVIA
CEEEEEEEEEEECCEEEEEECCEEEEEEECCCEEEEECEEEEEEECCCCHHHHHCCEEEE
NGSFDNDHKFFVFAGTLGYYVLQPFHLNDGRYILINKGTIADRKKELKLFDNDQRSVTGI
CCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCCEEEEE
LYCDHNKKVGWFVKNDIDDNLWFWFDIEAMIKTVNIPLESCIIWANDTVDSNGITINVPL
EEECCCCEEEEEEECCCCCCEEEEEEHHHEEEEECCCHHHEEEEECCCCCCCCEEEEEEE
KVRNDHLEYIITWYVLALVWLVGYLYWCRSKTT
EECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MWRIKFIFVFAIPFSIMITLGTWQVFRLKEKNIIIHNMQALPVKLSSDNLVSQRYNHVIA
CEEEEEEEEEEECCEEEEEECCEEEEEEECCCEEEEECEEEEEEECCCCHHHHHCCEEEE
NGSFDNDHKFFVFAGTLGYYVLQPFHLNDGRYILINKGTIADRKKELKLFDNDQRSVTGI
CCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCCEEEEE
LYCDHNKKVGWFVKNDIDDNLWFWFDIEAMIKTVNIPLESCIIWANDTVDSNGITINVPL
EEECCCCEEEEEEECCCCCCEEEEEEHHHEEEEECCCHHHEEEEECCCCCCCCEEEEEEE
KVRNDHLEYIITWYVLALVWLVGYLYWCRSKTT
EECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]