Definition Staphylococcus aureus subsp. aureus COL chromosome, complete genome.
Accession NC_002951
Length 2,809,422

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The map label for this gene is udk

Identifier: 57652002

GI number: 57652002

Start: 1694389

End: 1695012

Strand: Reverse

Name: udk

Synonym: SACOL1666

Alternate gene names: 57652002

Gene position: 1695012-1694389 (Counterclockwise)

Preceding gene: 57650494

Following gene: 57652001

Centisome position: 60.33

GC content: 33.49

Gene sequence:

>624_bases
ATGAAAGCTACTACAATCATTGGCATAGCTGGTGGATCTGGCTCAGGAAAAACAACTGTAACTAACGAAATTATGAAAAA
CTTAGAAGGTCATAGTGTCGCTTTACTTGCTCAAGATTACTATTATAAAGATCAAAAGCACTTGACTTTCGACGAGCGCC
TAGAAACCAATTATGACCATCCATTTGCATTCGATAATGATTTATTAATTGAAAATCTTAAAGACTTGAAAAATGGTAAA
GCAGTAGAAGTACCGACATATGATTATGCTAGTCATACAAGAAGTGACATTACCATTGATTTTAAACCTAAAGATGTTAT
TATCGTAGAAGGCATTTTCGCTTTAGAAAATAAGGTATTACGTGATATGATGGATGTTAAAATATATGTTGATACAGATG
CAGACTTGAGAATATTACGCCGTTTAACACGAGATACTAAAGAGCGTGGGCGTTCAATGGACTCTGTTATCAATCAATAT
TTAAGTGTTGTTAGACCTATGCATGACCAATTTATTGAACCGACTAAGAAATATGCTGATATAATTATTCCTGAAGGTGG
GAGCAATAAAGTTGCAATAGATATTATGACAACAAAAATTCAGTCTTTAGTTAGCAAGCAATAG

Upstream 100 bases:

>100_bases
GTAACAGCTTAGACGCGGCGCGCCATCCATTACAAATCGTTCAAATTAAAGTGGATCGCCCGATATATCCAAACAACATG
ATGAGAAAGGAAATTGGCTA

Downstream 100 bases:

>100_bases
TATAATTCAGTAAAGGAAGATGACAATATGGAAAATCAAAAGCAATATCCAATGACTCAAGAAGGTTTTGAAAAATTAGA
GCGTGAACTTGAAGAATTAA

Product: uridine kinase

Products: NA

Alternate protein names: Cytidine monophosphokinase; Uridine monophosphokinase

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGK
AVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQY
LSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ

Sequences:

>Translated_207_residues
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGK
AVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQY
LSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ
>Mature_207_residues
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGK
AVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQY
LSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ

Specific function: Pyrimidine salvage pathway. [C]

COG id: COG0572

COG function: function code F; Uridine kinase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the uridine kinase family

Homologues:

Organism=Homo sapiens, GI18699734, Length=211, Percent_Identity=40.2843601895735, Blast_Score=183, Evalue=7e-47,
Organism=Homo sapiens, GI301129207, Length=203, Percent_Identity=45.320197044335, Blast_Score=182, Evalue=2e-46,
Organism=Homo sapiens, GI57863312, Length=209, Percent_Identity=44.9760765550239, Blast_Score=182, Evalue=2e-46,
Organism=Homo sapiens, GI13899253, Length=211, Percent_Identity=41.7061611374408, Blast_Score=174, Evalue=5e-44,
Organism=Homo sapiens, GI209863022, Length=147, Percent_Identity=41.4965986394558, Blast_Score=117, Evalue=7e-27,
Organism=Escherichia coli, GI87082034, Length=204, Percent_Identity=49.5098039215686, Blast_Score=218, Evalue=2e-58,
Organism=Caenorhabditis elegans, GI17539894, Length=204, Percent_Identity=41.1764705882353, Blast_Score=172, Evalue=9e-44,
Organism=Caenorhabditis elegans, GI17539892, Length=204, Percent_Identity=41.1764705882353, Blast_Score=172, Evalue=9e-44,
Organism=Caenorhabditis elegans, GI71981181, Length=219, Percent_Identity=33.3333333333333, Blast_Score=137, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6324339, Length=191, Percent_Identity=35.0785340314136, Blast_Score=120, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6320223, Length=125, Percent_Identity=30.4, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45550449, Length=199, Percent_Identity=43.7185929648241, Blast_Score=176, Evalue=1e-44,
Organism=Drosophila melanogaster, GI28573516, Length=199, Percent_Identity=43.7185929648241, Blast_Score=175, Evalue=1e-44,
Organism=Drosophila melanogaster, GI28573514, Length=199, Percent_Identity=43.7185929648241, Blast_Score=175, Evalue=1e-44,
Organism=Drosophila melanogaster, GI28573512, Length=199, Percent_Identity=43.7185929648241, Blast_Score=175, Evalue=1e-44,
Organism=Drosophila melanogaster, GI24649624, Length=223, Percent_Identity=37.219730941704, Blast_Score=164, Evalue=4e-41,
Organism=Drosophila melanogaster, GI221458995, Length=225, Percent_Identity=36.8888888888889, Blast_Score=164, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URK_STAA1 (A7X320)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001442188.1
- ProteinModelPortal:   A7X320
- SMR:   A7X320
- STRING:   A7X320
- EnsemblBacteria:   EBSTAT00000004127
- GeneID:   5559152
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_1598
- eggNOG:   COG0572
- GeneTree:   EBGT00050000025242
- HOGENOM:   HBG527126
- OMA:   NQFVEPT
- ProtClustDB:   PRK05480
- BioCyc:   SAUR418127:SAHV_1598-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00551
- InterPro:   IPR006083
- InterPro:   IPR000764
- PANTHER:   PTHR10285:SF6
- PRINTS:   PR00988
- TIGRFAMs:   TIGR00235

Pfam domain/function: PF00485 PRK

EC number: =2.7.1.48

Molecular weight: Translated: 23505; Mature: 23505

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDH
CCCEEEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEECCEECCCCCCCHHHHHCCCCCC
PFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVL
CCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEECHHHHHHHHHH
RDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYAD
HHHHHEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
IIIPEGGSNKVAIDIMTTKIQSLVSKQ
EEEECCCCCEEEEEEHHHHHHHHHCCC
>Mature Secondary Structure
MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDH
CCCEEEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEECCEECCCCCCCHHHHHCCCCCC
PFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVL
CCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEECHHHHHHHHHH
RDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYAD
HHHHHEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
IIIPEGGSNKVAIDIMTTKIQSLVSKQ
EEEECCCCCEEEEEEHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA