Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
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Accession | NC_002951 |
Length | 2,809,422 |
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The map label for this gene is hemC [H]
Identifier: 57650542
GI number: 57650542
Start: 1747722
End: 1748648
Strand: Reverse
Name: hemC [H]
Synonym: SACOL1717
Alternate gene names: 57650542
Gene position: 1748648-1747722 (Counterclockwise)
Preceding gene: 57650543
Following gene: 57650541
Centisome position: 62.24
GC content: 34.52
Gene sequence:
>927_bases ATGCGTAAATTAGTCGTTGGCTCCAGAAGAAGTAAATTAGCTTTAACACAAAGCCAGCAATTTATTGATAAATTAAAAGC TGTCGAGCCAAATCTAGAAATTGAAATTAAAGAAATTGTCACGAAAGGCGATCGTATAGTAGATAAACAATTGTCTAAAG TCGGAGGCAAAGGCTTATTTGTTAAAGAAATACAACATGAACTTTTTGAAAAAAATATCGATATGGCAATACACTCGCTT AAAGACGTACCAAGTGTAATTCCGGAAGGTTTAACATTAGGTTGTATCCCTGATAGAGAATTACCTTTTGATGCGTATAT TTCTAAAACACATACACCACTATCCCAATTGCCAGAAGGCAGTATTATTGGTACTAGTTCATTACGTCGTGGTGCACAAA TATTATCTAAGTATCCTAATTTAGAGATTAAATGGATTAGAGGTAATATAGATACACGATTAGAAAAGTTACAAACTGAA GATTATGATGCGATTATTTTAGCTGCAGCTGGTTTAAGAAGAATGGGCTGGTCAGATGATATTGTAACATCTTATCTTGA TAGAGATACATTGTTACCTGCAATCGGACAAGGTGCTTTAGGGATAGAATGTCGTAGTGACGATGAAGAACTATTAACAT TATTAAGCAAAGTACATAATGATGAGGTTGCAAAATGTGTGACTGCTGAACGAACGTTTTTAGCAGAAATGGATGGTAGT TGTCAGGTGCCAATTGCAGGATATGCTACAATCTCAGATCAAAACGAAATCGAATTTACAGGTTTAATTATGACCCCAGA TGGTAAAGAACGATTTGAATATACAATGAACGGAACAGATCCGGTTGAGTTAGGCAAAACAGTGAGTAACAAATTAAAAG AGCAAGGTGCTTATGAAATTATAAAACGCTTAAATGAACAACATTAA
Upstream 100 bases:
>100_bases TTATTTTATTTTGCTTAAATATGATTAATTTATTTTTTGCAACACATTTTGTGAATTGAGAAAATAATCTAGAGCAATCC GTTCCTAGGAGGAATTGAAC
Downstream 100 bases:
>100_bases ATAATGGAGTGACGTTTAAATATGAAGCCAGTTGTAGTTATGACACAAACAAATGACATGCAAAGTGATTTAGTATCAAT TATTCACAAACCCTTTATTG
Product: porphobilinogen deaminase
Products: NA
Alternate protein names: PBG; Hydroxymethylbilane synthase; HMBS; Pre-uroporphyrinogen synthase [H]
Number of amino acids: Translated: 308; Mature: 308
Protein sequence:
>308_residues MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLFVKEIQHELFEKNIDMAIHSL KDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEGSIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTE DYDAIILAAAGLRRMGWSDDIVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS CQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEIIKRLNEQH
Sequences:
>Translated_308_residues MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLFVKEIQHELFEKNIDMAIHSL KDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEGSIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTE DYDAIILAAAGLRRMGWSDDIVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS CQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEIIKRLNEQH >Mature_308_residues MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLFVKEIQHELFEKNIDMAIHSL KDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEGSIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTE DYDAIILAAAGLRRMGWSDDIVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS CQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEIIKRLNEQH
Specific function: Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps [H]
COG id: COG0181
COG function: function code H; Porphobilinogen deaminase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HMBS family [H]
Homologues:
Organism=Homo sapiens, GI20149500, Length=286, Percent_Identity=43.7062937062937, Blast_Score=239, Evalue=2e-63, Organism=Homo sapiens, GI66933009, Length=286, Percent_Identity=43.7062937062937, Blast_Score=239, Evalue=3e-63, Organism=Escherichia coli, GI48994974, Length=300, Percent_Identity=46.3333333333333, Blast_Score=251, Evalue=4e-68, Organism=Saccharomyces cerevisiae, GI6319996, Length=318, Percent_Identity=34.9056603773585, Blast_Score=189, Evalue=4e-49, Organism=Drosophila melanogaster, GI20130425, Length=277, Percent_Identity=40.4332129963899, Blast_Score=204, Evalue=5e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000860 - InterPro: IPR022419 - InterPro: IPR022417 - InterPro: IPR022418 [H]
Pfam domain/function: PF01379 Porphobil_deam; PF03900 Porphobil_deamC [H]
EC number: =2.5.1.61 [H]
Molecular weight: Translated: 34355; Mature: 34355
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: PS00533 PORPHOBILINOGEN_DEAM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLF CCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCHHHHHHHHHHHCCCCCH VKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHCCCCCHHHCCCC SIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDD CEECHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCEEEEEHHHHHHCCCCHH IVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC CQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEI CCCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHH IKRLNEQH HHHHHCCC >Mature Secondary Structure MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLF CCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCCCHHHHHHHHHHHCCCCCH VKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHCCCCCHHHCCCC SIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDD CEECHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCEEEEEHHHHHHCCCCHH IVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS HHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC CQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEI CCCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHH IKRLNEQH HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA