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The map label for this gene is ysgA [C]

Identifier: 54295505

GI number: 54295505

Start: 2959056

End: 2959772

Strand: Reverse

Name: ysgA [C]

Synonym: lpl2592

Alternate gene names: 54295505

Gene position: 2959772-2959056 (Counterclockwise)

Preceding gene: 54295507

Following gene: 54295504

Centisome position: 88.47

GC content: 40.73

Gene sequence:

>717_bases
ATGTATTCATCGAATTATATTTATCAACATGATGATCTTGAGTTACACGGATTTTTAGCGCATGAAGAGGGAATTAAACA
ACCTCAGCCTGCTGTAATAGTCGCTCATGATTGGAGTGGAAGAGGAGAGTTTGCTTGCCTTAAAGCAAAACAACTTGCTG
AGATGGGCTATATAGGTTTTGCTTTGGATATGTATGGGCAAGGACAAATTGGTTCTAACAATGATGAAAAAATGGCATTA
ATGCAACCCTTGTACAGCGATCGCTCTTTGCTTAGGGAACGGTTGTATGCCGCATTGGAAGCCATTAAATCAATATCGGT
AGTCGATAAAAATCGCATAGCCATTATAGGGTTTTGCTTTGGTGGTTTGTGTGCCCTTGATTTAGCCAGGAGTGGCGCGG
ATATCCGAGGAGCAGTAAGTTTTCATGGCTTGCTTAATAAACCTGAGAATCTAGCATCCGGAAGAATTAAAGCAAAAATT
CTGGCTTTGCACGGTTATGATGATCCTATGGCGAAGCCAGAGCAAGTACATGCTTTTTGTCAGGAAATGACAGAAGCAAA
TGTCGATTGGCAAATGCATATGTATGGGCAGGTGAAACATGCTTTTACCAATCCTCAAGCGCATGATGAACATTTAGGAT
TAATTTACGATGAGGTTGCCGCACGTCGTTCATGGCAAGCAATGAGCCAGTTTTTACAAGAGATTTTTAATGTTTAA

Upstream 100 bases:

>100_bases
GAACAAAAGACAAAGAATAGCATTAGGCTAAACTAATGTAATTACTGGACTTTTACGGATATTGCCCTAGACTATTTTAA
AATAATTTAGGAGATATTTT

Downstream 100 bases:

>100_bases
AAAAATTCTGGTGGCTAATCGCGGTGAGATAGCCCTGCGAATAGTACGTGCTTGCAAGGAGATGGGGATAGCAGCAGTTA
CTATTCACAGTGAAGTGGAC

Product: hypothetical protein

Products: NA

Alternate protein names: Dienelactone hydrolase; DLH [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MYSSNYIYQHDDLELHGFLAHEEGIKQPQPAVIVAHDWSGRGEFACLKAKQLAEMGYIGFALDMYGQGQIGSNNDEKMAL
MQPLYSDRSLLRERLYAALEAIKSISVVDKNRIAIIGFCFGGLCALDLARSGADIRGAVSFHGLLNKPENLASGRIKAKI
LALHGYDDPMAKPEQVHAFCQEMTEANVDWQMHMYGQVKHAFTNPQAHDEHLGLIYDEVAARRSWQAMSQFLQEIFNV

Sequences:

>Translated_238_residues
MYSSNYIYQHDDLELHGFLAHEEGIKQPQPAVIVAHDWSGRGEFACLKAKQLAEMGYIGFALDMYGQGQIGSNNDEKMAL
MQPLYSDRSLLRERLYAALEAIKSISVVDKNRIAIIGFCFGGLCALDLARSGADIRGAVSFHGLLNKPENLASGRIKAKI
LALHGYDDPMAKPEQVHAFCQEMTEANVDWQMHMYGQVKHAFTNPQAHDEHLGLIYDEVAARRSWQAMSQFLQEIFNV
>Mature_238_residues
MYSSNYIYQHDDLELHGFLAHEEGIKQPQPAVIVAHDWSGRGEFACLKAKQLAEMGYIGFALDMYGQGQIGSNNDEKMAL
MQPLYSDRSLLRERLYAALEAIKSISVVDKNRIAIIGFCFGGLCALDLARSGADIRGAVSFHGLLNKPENLASGRIKAKI
LALHGYDDPMAKPEQVHAFCQEMTEANVDWQMHMYGQVKHAFTNPQAHDEHLGLIYDEVAARRSWQAMSQFLQEIFNV

Specific function: Unknown

COG id: COG0412

COG function: function code Q; Dienelactone hydrolase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dienelactone hydrolase family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17536419, Length=225, Percent_Identity=42.2222222222222, Blast_Score=171, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI17532655, Length=226, Percent_Identity=37.6106194690265, Blast_Score=148, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17532653, Length=213, Percent_Identity=36.6197183098592, Blast_Score=132, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17536415, Length=225, Percent_Identity=36.4444444444444, Blast_Score=130, Evalue=6e-31,
Organism=Caenorhabditis elegans, GI193204305, Length=209, Percent_Identity=34.4497607655502, Blast_Score=111, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17534829, Length=157, Percent_Identity=40.1273885350318, Blast_Score=103, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002925 [H]

Pfam domain/function: PF01738 DLH [H]

EC number: =3.1.1.45 [H]

Molecular weight: Translated: 26691; Mature: 26691

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSSNYIYQHDDLELHGFLAHEEGIKQPQPAVIVAHDWSGRGEFACLKAKQLAEMGYIGF
CCCCCEEEECCCCEEEEEEECHHCCCCCCCEEEEEECCCCCCCEEEHHHHHHHHHCCCEE
ALDMYGQGQIGSNNDEKMALMQPLYSDRSLLRERLYAALEAIKSISVVDKNRIAIIGFCF
EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHH
GGLCALDLARSGADIRGAVSFHGLLNKPENLASGRIKAKILALHGYDDPMAKPEQVHAFC
HHHHHHHHHHCCCCCEEHHHHHHHCCCCCHHHCCCEEEEEEEEECCCCCCCCHHHHHHHH
QEMTEANVDWQMHMYGQVKHAFTNPQAHDEHLGLIYDEVAARRSWQAMSQFLQEIFNV
HHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYSSNYIYQHDDLELHGFLAHEEGIKQPQPAVIVAHDWSGRGEFACLKAKQLAEMGYIGF
CCCCCEEEECCCCEEEEEEECHHCCCCCCCEEEEEECCCCCCCEEEHHHHHHHHHCCCEE
ALDMYGQGQIGSNNDEKMALMQPLYSDRSLLRERLYAALEAIKSISVVDKNRIAIIGFCF
EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHH
GGLCALDLARSGADIRGAVSFHGLLNKPENLASGRIKAKILALHGYDDPMAKPEQVHAFC
HHHHHHHHHHCCCCCEEHHHHHHHCCCCCHHHCCCEEEEEEEEECCCCCCCCHHHHHHHH
QEMTEANVDWQMHMYGQVKHAFTNPQAHDEHLGLIYDEVAARRSWQAMSQFLQEIFNV
HHHHHCCCCEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]