| Definition | Mycoplasma hyopneumoniae 232, complete genome. |
|---|---|
| Accession | NC_006360 |
| Length | 892,758 |
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The map label for this gene is oppD
Identifier: 54020376
GI number: 54020376
Start: 202575
End: 203987
Strand: Reverse
Name: oppD
Synonym: mhp167
Alternate gene names: 54020376
Gene position: 203987-202575 (Counterclockwise)
Preceding gene: 54020377
Following gene: 54020375
Centisome position: 22.85
GC content: 32.06
Gene sequence:
>1413_bases ATGATTTCGTATTTTTATTCAAAATCAGCACCGCAGTGTCTTAAAACTGAAAATCCCAGATTTTGTTATAAACTAAATAA AAATTTAGTAAAATTTCAAAAAGAATTAGATCTATTAAAACAGAAAAAACTTGCACCAAAAGAATATGAAAGCCAGTTTA GTGATCTAAAAGAAAAATTTTTAGCTTATGAAGTTAATATAAAAAAACATTATCAGGCAAAAAAATCCTATAAATTACGT GCTATTTGAGATCGGATTCAAAAATATTGACATACAAGCTTTAACAGATCCCATTTTGATTTTGAAGCATTTTCTAAAAA TGTTGAATATAAACAAATAGGAAATAAACGTCATAAAATTGTTGCCCAGATCAAAAATTTAAACCTTTCCTTTGTCAATC CAGCAAATCCCGAGATTAGAAATATCGTGATTCGTAATGCCTCAATTGATTTTTATGAAGGCGAAATTCATGCCTTAATT GGCGAGTCTGGTTCAGGAAAATCAGTAATTACTTCTTGTCTTTATGGTCTTGTCGGTCAAAACGGGGTAATTGAATCAGG TGAAATCAAACTTTTTAACAATCCAGTGCAAAATTTTGATTTTCGTGCTTGAGAACTTTCAAATTATCGGGGAAAAGTTA TTTCAGCTGTCTTCCAGAATCCGATGTCAACTTTAAATCCAACAAAAAAAATAGGCATCCAAATTATGGAAGGAATGTTA TTAAACAAGATTGTTAAAACGAAAAAAGAAGCCTATGAAAAAGCACTTTTATATCTTAGAATGACCAAAATTGCTAACCC TGAAATGGTTATGAAATTATATCCCCATGAGCTTTCAGGAGGTATGATTCAAAGAATTGTGATCTCAGCAATTTTATCAC TTGAACCTAAAATTATCGTTATGGATGAACCAACAACAGCTTTGGATACAACCGTGCAAGCTTTAGTTCTTGATATTATC CGCGATCTCCAAAAAAGACTAAAAATTACAATTATTTTCATTACTCACGACCTTGGAGTTGTCGCTTCTCTTGCAACTTA TATCTCAATTATGTATGCTGGTCAAGTTGTCGAGGAAGGTACAAGAGATGAAATTCTTTTAAATCCAAGACATCCATATA CTTGAGGGCTAATTACTTCAATGCCTGATGTCAATAAAGGCGAACGACTTCAGTCAATTCGCGGGGTTGTTCCTTCTTCT TTAAATTCAATTGTTGGCGATGCTTTTGCAGTTAGAAACGATTATGCCTTAGAACAAGATTTTTTTATTGAACCTAAATT TTACAGAATAAGTCCAACTCACCGAGTTAAATCAGCTTTACTTGATCCAAAAGCACCAAAAGTTGTCCCACCAAAAATTA TTTACCAAAAATGACTTCAATTTGCAAAGATGAGGCAAGAAAATGGAAGATAA
Upstream 100 bases:
>100_bases CGTTATGTTTTAATTCCTGCATTTTTCTTAATTTTACTTACCTCTTCAATTCAAATGATTGGAAATTCAGTTCAGGATGC CCTAAGGAGGCAAAGATAAA
Downstream 100 bases:
>100_bases AAAAAGATTTTACCTAGAAAAAAATAGTTATTTTTTTGGCAAAATAGTAAAGAATATTTACCGCGCACTTACTCCCGGTA TTGAAAAAATGCTTGAATTT
Product: oligopeptide ABC transporter ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 470; Mature: 470
Protein sequence:
>470_residues MISYFYSKSAPQCLKTENPRFCYKLNKNLVKFQKELDLLKQKKLAPKEYESQFSDLKEKFLAYEVNIKKHYQAKKSYKLR AIWDRIQKYWHTSFNRSHFDFEAFSKNVEYKQIGNKRHKIVAQIKNLNLSFVNPANPEIRNIVIRNASIDFYEGEIHALI GESGSGKSVITSCLYGLVGQNGVIESGEIKLFNNPVQNFDFRAWELSNYRGKVISAVFQNPMSTLNPTKKIGIQIMEGML LNKIVKTKKEAYEKALLYLRMTKIANPEMVMKLYPHELSGGMIQRIVISAILSLEPKIIVMDEPTTALDTTVQALVLDII RDLQKRLKITIIFITHDLGVVASLATYISIMYAGQVVEEGTRDEILLNPRHPYTWGLITSMPDVNKGERLQSIRGVVPSS LNSIVGDAFAVRNDYALEQDFFIEPKFYRISPTHRVKSALLDPKAPKVVPPKIIYQKWLQFAKMRQENGR
Sequences:
>Translated_470_residues MISYFYSKSAPQCLKTENPRFCYKLNKNLVKFQKELDLLKQKKLAPKEYESQFSDLKEKFLAYEVNIKKHYQAKKSYKLR AI*DRIQKY*HTSFNRSHFDFEAFSKNVEYKQIGNKRHKIVAQIKNLNLSFVNPANPEIRNIVIRNASIDFYEGEIHALI GESGSGKSVITSCLYGLVGQNGVIESGEIKLFNNPVQNFDFRA*ELSNYRGKVISAVFQNPMSTLNPTKKIGIQIMEGML LNKIVKTKKEAYEKALLYLRMTKIANPEMVMKLYPHELSGGMIQRIVISAILSLEPKIIVMDEPTTALDTTVQALVLDII RDLQKRLKITIIFITHDLGVVASLATYISIMYAGQVVEEGTRDEILLNPRHPYT*GLITSMPDVNKGERLQSIRGVVPSS LNSIVGDAFAVRNDYALEQDFFIEPKFYRISPTHRVKSALLDPKAPKVVPPKIIYQK*LQFAKMRQENGR >Mature_470_residues MISYFYSKSAPQCLKTENPRFCYKLNKNLVKFQKELDLLKQKKLAPKEYESQFSDLKEKFLAYEVNIKKHYQAKKSYKLR AI*DRIQKY*HTSFNRSHFDFEAFSKNVEYKQIGNKRHKIVAQIKNLNLSFVNPANPEIRNIVIRNASIDFYEGEIHALI GESGSGKSVITSCLYGLVGQNGVIESGEIKLFNNPVQNFDFRA*ELSNYRGKVISAVFQNPMSTLNPTKKIGIQIMEGML LNKIVKTKKEAYEKALLYLRMTKIANPEMVMKLYPHELSGGMIQRIVISAILSLEPKIIVMDEPTTALDTTVQALVLDII RDLQKRLKITIIFITHDLGVVASLATYISIMYAGQVVEEGTRDEILLNPRHPYT*GLITSMPDVNKGERLQSIRGVVPSS LNSIVGDAFAVRNDYALEQDFFIEPKFYRISPTHRVKSALLDPKAPKVVPPKIIYQK*LQFAKMRQENGR
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI156105685, Length=250, Percent_Identity=27.6, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI42741659, Length=291, Percent_Identity=27.1477663230241, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI9961252, Length=284, Percent_Identity=26.7605633802817, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI4505771, Length=284, Percent_Identity=26.7605633802817, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI9961250, Length=284, Percent_Identity=26.7605633802817, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI42490749, Length=242, Percent_Identity=27.6859504132231, Blast_Score=66, Evalue=8e-11, Organism=Homo sapiens, GI255708477, Length=304, Percent_Identity=25, Blast_Score=66, Evalue=8e-11, Organism=Escherichia coli, GI48994883, Length=306, Percent_Identity=35.6209150326797, Blast_Score=192, Evalue=3e-50, Organism=Escherichia coli, GI1789963, Length=275, Percent_Identity=37.0909090909091, Blast_Score=190, Evalue=2e-49, Organism=Escherichia coli, GI145693107, Length=269, Percent_Identity=37.546468401487, Blast_Score=189, Evalue=3e-49, Organism=Escherichia coli, GI1787759, Length=294, Percent_Identity=38.0952380952381, Blast_Score=187, Evalue=2e-48, Organism=Escherichia coli, GI1789962, Length=277, Percent_Identity=38.9891696750903, Blast_Score=175, Evalue=4e-45, Organism=Escherichia coli, GI1787500, Length=280, Percent_Identity=34.6428571428571, Blast_Score=166, Evalue=2e-42, Organism=Escherichia coli, GI1787548, Length=315, Percent_Identity=29.2063492063492, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=34.6153846153846, Blast_Score=142, Evalue=4e-35, Organism=Escherichia coli, GI1787758, Length=246, Percent_Identity=32.9268292682927, Blast_Score=132, Evalue=5e-32, Organism=Escherichia coli, GI1789890, Length=247, Percent_Identity=32.7935222672065, Blast_Score=131, Evalue=8e-32, Organism=Escherichia coli, GI48994997, Length=236, Percent_Identity=34.3220338983051, Blast_Score=123, Evalue=3e-29, Organism=Escherichia coli, GI1787547, Length=253, Percent_Identity=28.4584980237154, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1789032, Length=234, Percent_Identity=36.7521367521368, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1789891, Length=215, Percent_Identity=31.6279069767442, Blast_Score=109, Evalue=3e-25, Organism=Escherichia coli, GI1788761, Length=259, Percent_Identity=28.957528957529, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1788225, Length=232, Percent_Identity=30.6034482758621, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI1787712, Length=255, Percent_Identity=27.4509803921569, Blast_Score=95, Evalue=1e-20, Organism=Escherichia coli, GI1786398, Length=231, Percent_Identity=26.8398268398268, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1789672, Length=236, Percent_Identity=32.2033898305085, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1788644, Length=126, Percent_Identity=35.7142857142857, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787029, Length=229, Percent_Identity=29.6943231441048, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1788450, Length=251, Percent_Identity=27.0916334661355, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1787370, Length=232, Percent_Identity=26.2931034482759, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI87081791, Length=246, Percent_Identity=29.2682926829268, Blast_Score=86, Evalue=6e-18, Organism=Escherichia coli, GI1786703, Length=205, Percent_Identity=31.219512195122, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1786345, Length=241, Percent_Identity=27.3858921161826, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI87082267, Length=245, Percent_Identity=26.9387755102041, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1786872, Length=215, Percent_Identity=31.1627906976744, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1787089, Length=220, Percent_Identity=30, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI87081709, Length=246, Percent_Identity=26.0162601626016, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1790467, Length=264, Percent_Identity=27.6515151515151, Blast_Score=79, Evalue=7e-16, Organism=Escherichia coli, GI1790162, Length=256, Percent_Identity=24.609375, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1786253, Length=220, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1790739, Length=223, Percent_Identity=26.0089686098655, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI87081834, Length=243, Percent_Identity=25.9259259259259, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1789991, Length=224, Percent_Identity=30.3571428571429, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1786803, Length=230, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786319, Length=223, Percent_Identity=26.457399103139, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1787105, Length=232, Percent_Identity=28.8793103448276, Blast_Score=69, Evalue=7e-13, Organism=Escherichia coli, GI1789586, Length=233, Percent_Identity=28.755364806867, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1790534, Length=234, Percent_Identity=25.6410256410256, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1790544, Length=219, Percent_Identity=26.027397260274, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI1786563, Length=215, Percent_Identity=25.1162790697674, Blast_Score=63, Evalue=4e-11, Organism=Escherichia coli, GI1787143, Length=260, Percent_Identity=28.8461538461538, Blast_Score=63, Evalue=5e-11, Organism=Escherichia coli, GI1787792, Length=218, Percent_Identity=25.2293577981651, Blast_Score=62, Evalue=9e-11, Organism=Caenorhabditis elegans, GI25146777, Length=254, Percent_Identity=30.3149606299213, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17565938, Length=284, Percent_Identity=28.169014084507, Blast_Score=79, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17541710, Length=264, Percent_Identity=26.8939393939394, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17558664, Length=267, Percent_Identity=26.5917602996255, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17533971, Length=289, Percent_Identity=25.9515570934256, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17569143, Length=260, Percent_Identity=25.7692307692308, Blast_Score=73, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17543740, Length=285, Percent_Identity=27.3684210526316, Blast_Score=73, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193208177, Length=276, Percent_Identity=28.2608695652174, Blast_Score=72, Evalue=7e-13, Organism=Caenorhabditis elegans, GI71996809, Length=253, Percent_Identity=30.0395256916996, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193211015, Length=253, Percent_Identity=30.0395256916996, Blast_Score=71, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211017, Length=253, Percent_Identity=30.0395256916996, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI212646699, Length=268, Percent_Identity=26.1194029850746, Blast_Score=68, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115533592, Length=270, Percent_Identity=24.8148148148148, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193202349, Length=257, Percent_Identity=29.5719844357977, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17569145, Length=256, Percent_Identity=25, Blast_Score=67, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71984940, Length=278, Percent_Identity=29.4964028776978, Blast_Score=65, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=268, Percent_Identity=27.2388059701493, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6322640, Length=255, Percent_Identity=28.6274509803922, Blast_Score=76, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323959, Length=249, Percent_Identity=30.5220883534137, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6324985, Length=265, Percent_Identity=24.5283018867925, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI24641565, Length=288, Percent_Identity=29.8611111111111, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI17136662, Length=245, Percent_Identity=28.9795918367347, Blast_Score=66, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 53018; Mature: 53018
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISYFYSKSAPQCLKTENPRFCYKLNKNLVKFQKELDLLKQKKLAPKEYESQFSDLKEKF CCCCCCCCCCCHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LAYEVNIKKHYQAKKSYKLRAIDRIQKYHTSFNRSHFDFEAFSKNVEYKQIGNKRHKIVA HEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHCCHHHHHHH QIKNLNLSFVNPANPEIRNIVIRNASIDFYEGEIHALIGESGSGKSVITSCLYGLVGQNG HHHCCCEEEECCCCCCCCEEEEECCCCEEECCEEEEEECCCCCCHHHHHHHHHHHHCCCC VIESGEIKLFNNPVQNFDFRAELSNYRGKVISAVFQNPMSTLNPTKKIGIQIMEGMLLNK CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHH IVKTKKEAYEKALLYLRMTKIANPEMVMKLYPHELSGGMIQRIVISAILSLEPKIIVMDE HHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCHHCCHHHHHHHHHHHHHCCCEEEEECC PTTALDTTVQALVLDIIRDLQKRLKITIIFITHDLGVVASLATYISIMYAGQVVEEGTRD CCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC EILLNPRHPYTGLITSMPDVNKGERLQSIRGVVPSSLNSIVGDAFAVRNDYALEQDFFIE CEEECCCCCCCHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEC PKFYRISPTHRVKSALLDPKAPKVVPPKIIYQKLQFAKMRQENGR CCEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MISYFYSKSAPQCLKTENPRFCYKLNKNLVKFQKELDLLKQKKLAPKEYESQFSDLKEKF CCCCCCCCCCCHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LAYEVNIKKHYQAKKSYKLRAIDRIQKYHTSFNRSHFDFEAFSKNVEYKQIGNKRHKIVA HEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHCCHHHHHHH QIKNLNLSFVNPANPEIRNIVIRNASIDFYEGEIHALIGESGSGKSVITSCLYGLVGQNG HHHCCCEEEECCCCCCCCEEEEECCCCEEECCEEEEEECCCCCCHHHHHHHHHHHHCCCC VIESGEIKLFNNPVQNFDFRAELSNYRGKVISAVFQNPMSTLNPTKKIGIQIMEGMLLNK CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHH IVKTKKEAYEKALLYLRMTKIANPEMVMKLYPHELSGGMIQRIVISAILSLEPKIIVMDE HHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCHHCCHHHHHHHHHHHHHCCCEEEEECC PTTALDTTVQALVLDIIRDLQKRLKITIIFITHDLGVVASLATYISIMYAGQVVEEGTRD CCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC EILLNPRHPYTGLITSMPDVNKGERLQSIRGVVPSSLNSIVGDAFAVRNDYALEQDFFIE CEEECCCCCCCHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEC PKFYRISPTHRVKSALLDPKAPKVVPPKIIYQKLQFAKMRQENGR CCEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]