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The map label for this gene is yrrC [H]

Identifier: 52786607

GI number: 52786607

Start: 2761102

End: 2763498

Strand: Reverse

Name: yrrC [H]

Synonym: BLi02873

Alternate gene names: 52786607

Gene position: 2763498-2761102 (Counterclockwise)

Preceding gene: 52786608

Following gene: 52786606

Centisome position: 65.44

GC content: 48.52

Gene sequence:

>2397_bases
ATGCAGCGCCATAACCCGGACCAGATCGAAATGGAAGAAGCTTCATTTGTAAAAGGAACGGTAACGGCTGTCATATATCA
TAATGAAACAAACCTGTATACCGTACTGAAAGTAAAAGTGGAAGAAACATCAGAGTCTTTTGAAGACAAAACCGTTTCTG
TCACCGGTTACTTTCCTTTGATCCATGAAGACGATATCTACACATTTTACGGAAAAACCGCCTCCCATCCGAAATTTGGC
CTGCAATTTCAAGCGGATCATTTCAAAAAGGAAGTGCCGACAACGAAAGAAGGCGTGATCCAATACTTGGCCAGCGATTT
ATTTGAAGGAATCGGCAAGAAAACGGCCGAGGAAATTGTCAATAAGCTGGGGGAAGGGGCAATCAACAAAATTTTAAGCG
ACGGCGCCGTCCTGTATGATGTCCCGAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCGCTGCCCTTCAGCAGCATCAG
GGGCTCGAGCAGATTATGATCTCCTTGAGCGAATTCGGCTTCGGCCCCCAGCTGTCCATGAAAATTTATCAGGCGTACGA
AGCGGAAACGCTCGATAAAATCCGCGAAAATCCGTACCAGCTTGTCAAAGATGTTGAAGGAATCGGCTTTATCAAAGCAG
ACGAACTGGGCGGCAGAATGGGGATCTCAGGCAAACATGAAGAGCGGATCAAAGCGGCGATTTTATACACGGTTGAAGCG
ACATGCCTTCAAGAAGGGCATACGTACATAGAAACGAGACAGCTCATCATCGAGACGCAAAAGCTGTTAAACCAGTCAGC
AGGCGATGAAAAAGTAACCGAGATGGATGTGGCGGACGCGATCATTTCCTTAGGGGAGCAAAAAGAGCTGTTCATTGAAG
ATGAAAGGTGTTATTATCCGTCCCTTTACTACGCTGAACAAAGCTTTGCCAAAAGGGTGCAGAAAATCGCCGGACAGACC
GAATACGATGACCAGTTTCCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAAAGTGCAGTACGC
GCCAAGCCAAAAAGAAGCCATACAAAAAGCGCTGATGTCGCCGATGCTGCTTTTGACGGGCGGACCGGGAACCGGGAAAA
CGACCGTCATCAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGGCTTAAGCTTAAATCCGGCTGATTACAAAAAAGAT
GAAACGTTTCCGTTTGTGCTGGCAGCACCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGTCTGCCGGCCGT
TACGATTCACAGGCTTCTCGGCTGGAACGGAGCCGAAGGATTTACGCACGATGAAGACAATCCGATTGAAGGACGGCTGC
TCATTATTGATGAAACGAGCATGCTTGATATATGGCTTGCCAACCAATTATTCAAGGCGATCCCCGATCGGATACAGGTG
ATCATGGTCGGAGATGAAGACCAGCTTCCGTCCGTCGGTCCCGGACAGGTGCTAAGGGATCTGTTGGCATCGAATGTGAT
TCCTTCTGTCAGATTAACCGACATTTACAGACAGGCTGAAGGCTCTTCAATCGTTGAACTGGCGCACGAAATGAAACAGG
GAAAGCTTCCGGAAAACTTGGCCGCCCCGACAAAAGACCGTTCTTTTATTCGCTGCCGCCAGCAGCAGATCAAAGAAGTC
GTCGAAAAAGTCGTCAAAAACGCGCTGCAAAAAGGATATTCGGCCAGGGATATTCAGGTTTTGGCTCCGATGTACAGAGG
AGCGGCCGGCATCAATGAGTTGAACGCCCTTTTGCAGGGCATACTGAATCCGCCGAAGCCGAAAGGCAGGGAAATGAAGT
ACGGAGATGTCGTGTACCGTACCGGAGATAAAGTGCTCCAGCTCGTCAACCAGCCGGAGCATAACGTGTTTAACGGTGAC
ATGGGCGAGATCGTCTCGATTTTTTATGCGAAAGAAAATACGGAAAAAGAAGATATGGCCGTTGTCTCTTTCGACGGGAA
TGAAATCACGTTTGCAAAAAAAGATTTCAACCAGTTTACGCACGCCTATTGCTGTTCGATCCACAAATCGCAAGGCAGCG
AATTTCCGATCGTCATCCTTCCGGTCGTCAAAAGCTATTACCGGATGCTGAGAAGGAACTTGCTTTACACGGCTATTACA
AGAAGCAAAAAATTCCTGATTCTGTGCGGCGAAGAGGAAGCCCTTGAATGGGGCGTGAAAAATAAGGAATCATCAGAAAG
GCAGACATCGCTTAAAAGACGGCTTCAGCAGGCGGCACATGAAGAGGATGAAGAGCTCATGGCGCTTCAAAAAGAGCTGC
CATTCAGCGTCTATGACGCCAATATCGGGATGGAAGGCATTACACCTTTTGATTTTATGGAAAAGGAAGCAGAATAA

Upstream 100 bases:

>100_bases
CGGATCATATGCTCAGCATTCGCGCCAAGCAGCTTTTAGAAGAAGCTTGATTGATCAAGGGCCGTCATGACCGATTTTGA
ATGGAGGGGGGATAACAGTG

Downstream 100 bases:

>100_bases
GTGTTTTTCATGGAATCCATTTCATCGTATGAGTCGCGGCGCAACAGCAGATCATAAGAGTGTTCGTAAAAAGGTGGTTG
ATCACACTTTGAGAACATGC

Product: YrrC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 798; Mature: 798

Protein sequence:

>798_residues
MQRHNPDQIEMEEASFVKGTVTAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVNKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIETRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVIPSVRLTDIYRQAEGSSIVELAHEMKQGKLPENLAAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQVLAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVVSFDGNEITFAKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVYDANIGMEGITPFDFMEKEAE

Sequences:

>Translated_798_residues
MQRHNPDQIEMEEASFVKGTVTAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVNKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIETRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVIPSVRLTDIYRQAEGSSIVELAHEMKQGKLPENLAAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQVLAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVVSFDGNEITFAKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVYDANIGMEGITPFDFMEKEAE
>Mature_798_residues
MQRHNPDQIEMEEASFVKGTVTAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVNKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIETRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVIPSVRLTDIYRQAEGSSIVELAHEMKQGKLPENLAAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQVLAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVVSFDGNEITFAKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVYDANIGMEGITPFDFMEKEAE

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=412, Percent_Identity=27.6699029126214, Blast_Score=110, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 89746; Mature: 89746

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRHNPDQIEMEEASFVKGTVTAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPL
CCCCCCCCCCHHHHHHHCEEEEEEEEECCCCEEEEEEEEEHHHHHCCCCCEEEEEEEEEE
IHEDDIYTFYGKTASHPKFGLQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIV
EECCCEEEEECCCCCCCCCCCEECHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
NKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQGLEQIMISLSEFGFGPQLSM
HHHCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHH
KIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
HHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHEEHEEEHHH
TCLQEGHTYIETRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYP
HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
SLYYAEQSFAKRVQKIAGQTEYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMS
CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHCC
PMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKDETFPFVLAAPTGRAAKRMSE
CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHH
STGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
HCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
IMVGDEDQLPSVGPGQVLRDLLASNVIPSVRLTDIYRQAEGSSIVELAHEMKQGKLPENL
EEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHH
AAPTKDRSFIRCRQQQIKEVVEKVVKNALQKGYSARDIQVLAPMYRGAAGINELNALLQG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
ILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGDMGEIVSIFYAKENTEKEDMA
HCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEE
VVSFDGNEITFAKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
EEEECCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVYDA
CCCEEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEC
NIGMEGITPFDFMEKEAE
CCCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MQRHNPDQIEMEEASFVKGTVTAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPL
CCCCCCCCCCHHHHHHHCEEEEEEEEECCCCEEEEEEEEEHHHHHCCCCCEEEEEEEEEE
IHEDDIYTFYGKTASHPKFGLQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIV
EECCCEEEEECCCCCCCCCCCEECHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
NKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQGLEQIMISLSEFGFGPQLSM
HHHCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHH
KIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
HHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHEEHEEEHHH
TCLQEGHTYIETRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYP
HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
SLYYAEQSFAKRVQKIAGQTEYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMS
CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHCC
PMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKDETFPFVLAAPTGRAAKRMSE
CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHH
STGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
HCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE
IMVGDEDQLPSVGPGQVLRDLLASNVIPSVRLTDIYRQAEGSSIVELAHEMKQGKLPENL
EEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHH
AAPTKDRSFIRCRQQQIKEVVEKVVKNALQKGYSARDIQVLAPMYRGAAGINELNALLQG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
ILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGDMGEIVSIFYAKENTEKEDMA
HCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEE
VVSFDGNEITFAKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
EEEECCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVYDA
CCCEEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEC
NIGMEGITPFDFMEKEAE
CCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]