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The map label for this gene is yrrB [H]

Identifier: 52786608

GI number: 52786608

Start: 2763549

End: 2764199

Strand: Reverse

Name: yrrB [H]

Synonym: BLi02874

Alternate gene names: 52786608

Gene position: 2764199-2763549 (Counterclockwise)

Preceding gene: 52786609

Following gene: 52786607

Centisome position: 65.46

GC content: 48.85

Gene sequence:

>651_bases
TTGGATTACAATCAAATTGGAATAGATGCAATGCAAAAAGGCGACTTTGAAAAAGCCGCTGAAGCCTTTACAAAGGCAAT
TGATGAAAACAGCGGAGATCCGGTGCCTTATATCAACTTTGCCAACCTGCTTTCTGCAGTCGGCGAATTGGACAGGGCGC
TTAAGTTTTACGACAGGGCGGCTGCTTTGGATGAGAAAGCAGGAGCGGCTTATTATGGAGCAGGGAATGTCTATGTCATG
AAAGAGCGGTATCAAGAAGCGAAGGACATGTTCGAAAAAGCGCATCGGACGGGCATGGAAAACAGCGACTTATATTATAT
GCTCGGAACCACGCTCGTGAAGCTTGAGCAGCCGAAGCTCGCAATGCCGTATTTGCAAAGAGCCGCCGAGCTGAACGATG
CGGATGTCGAAGCCCGTTTTCATTACGCGATGTGCCTTGCCAATGAAGGGATGCTGGACGAAGCGATCACGGAATTTTCA
AATGTAACGGAGCGCGACCCGTCCCATGCCGATGCATTTTATAATTTAGGCGTTGCCTATGCGTTTAAGGAAGATCGGAA
AACAGCGCTCGACATGCTGAACAAGGCGCTGGACATTCAGCCGGATCATATGCTCAGCATTCGCGCCAAGCAGCTTTTAG
AAGAAGCTTGA

Upstream 100 bases:

>100_bases
TGTATAAAACCGGGGCTCTGGATACACCCCGGAGCTTCTCGAACGGCTGCCGGCAATGTCGGCGGCCTTTTTAAAATAGT
TCGTGAAAGGGAGAGGGCTT

Downstream 100 bases:

>100_bases
TTGATCAAGGGCCGTCATGACCGATTTTGAATGGAGGGGGGATAACAGTGATGCAGCGCCATAACCCGGACCAGATCGAA
ATGGAAGAAGCTTCATTTGT

Product: YrrB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MDYNQIGIDAMQKGDFEKAAEAFTKAIDENSGDPVPYINFANLLSAVGELDRALKFYDRAAALDEKAGAAYYGAGNVYVM
KERYQEAKDMFEKAHRTGMENSDLYYMLGTTLVKLEQPKLAMPYLQRAAELNDADVEARFHYAMCLANEGMLDEAITEFS
NVTERDPSHADAFYNLGVAYAFKEDRKTALDMLNKALDIQPDHMLSIRAKQLLEEA

Sequences:

>Translated_216_residues
MDYNQIGIDAMQKGDFEKAAEAFTKAIDENSGDPVPYINFANLLSAVGELDRALKFYDRAAALDEKAGAAYYGAGNVYVM
KERYQEAKDMFEKAHRTGMENSDLYYMLGTTLVKLEQPKLAMPYLQRAAELNDADVEARFHYAMCLANEGMLDEAITEFS
NVTERDPSHADAFYNLGVAYAFKEDRKTALDMLNKALDIQPDHMLSIRAKQLLEEA
>Mature_216_residues
MDYNQIGIDAMQKGDFEKAAEAFTKAIDENSGDPVPYINFANLLSAVGELDRALKFYDRAAALDEKAGAAYYGAGNVYVM
KERYQEAKDMFEKAHRTGMENSDLYYMLGTTLVKLEQPKLAMPYLQRAAELNDADVEARFHYAMCLANEGMLDEAITEFS
NVTERDPSHADAFYNLGVAYAFKEDRKTALDMLNKALDIQPDHMLSIRAKQLLEEA

Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI224809432, Length=171, Percent_Identity=29.2397660818713, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24659892, Length=192, Percent_Identity=25, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 24299; Mature: 24299

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYNQIGIDAMQKGDFEKAAEAFTKAIDENSGDPVPYINFANLLSAVGELDRALKFYDRA
CCCCHHCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHH
AALDEKAGAAYYGAGNVYVMKERYQEAKDMFEKAHRTGMENSDLYYMLGTTLVKLEQPKL
HHHHHHCCCEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEECCCCC
AMPYLQRAAELNDADVEARFHYAMCLANEGMLDEAITEFSNVTERDPSHADAFYNLGVAY
HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCHHE
AFKEDRKTALDMLNKALDIQPDHMLSIRAKQLLEEA
EEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MDYNQIGIDAMQKGDFEKAAEAFTKAIDENSGDPVPYINFANLLSAVGELDRALKFYDRA
CCCCHHCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHH
AALDEKAGAAYYGAGNVYVMKERYQEAKDMFEKAHRTGMENSDLYYMLGTTLVKLEQPKL
HHHHHHCCCEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEECCCCC
AMPYLQRAAELNDADVEARFHYAMCLANEGMLDEAITEFSNVTERDPSHADAFYNLGVAY
HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCHHE
AFKEDRKTALDMLNKALDIQPDHMLSIRAKQLLEEA
EEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]