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The map label for this gene is dnaD [H]

Identifier: 52786114

GI number: 52786114

Start: 2316024

End: 2316722

Strand: Reverse

Name: dnaD [H]

Synonym: BLi02370

Alternate gene names: 52786114

Gene position: 2316722-2316024 (Counterclockwise)

Preceding gene: 52786115

Following gene: 52786113

Centisome position: 54.86

GC content: 42.49

Gene sequence:

>699_bases
ATGAAAAAACAGCACTTTATTAAGATGCAGGATATGGGAGCTGTCACCATTCCGAATCTGCTCTTTATGAACTATCGGGA
GCTTGGCTTAAACGAGACAGAATTCATGCTGCTCTTAAACATTAAAATGCATGTTGAAAGAGGTTCTTTTTTTCCGACGC
CGGAGGAATTAAGCAAGACGATGTCGATTGAAACCGAAGAATGCATGAATATGCTGAGAATGTTCATTCAAAAAGGCTTC
ATCTATATAGAAGAATGCGAAGACCAGAACGGCATTAAATTTGAAAAATATTCGCTCGAACCTCTCTGGGGCAAGCTGTT
TGAGCTTTTAGAAATGGCCGAGCAGAAAAAACTCGCCGAACAGAATGAAGGCGAACAGAAGAGCCTTTATACAATCTTTG
AAGAAGAGTTTGCACGACCGCTTTCTCCGCTGGAATGCGAGACGCTCAGCATCTGGCTTGACCAGGATCATCACGATGCA
CAGCTGATCAAACAAGCTCTCAAAGAAGCCGTCATATCAGGAAAATTAAATTTCCGCTACATTGACCGGATTCTGTTTGA
GTGGAAGAAAAACGGCGTTTCAACAGTCGAACAAGCCGTAAACTACAGCCAAAGATTCAGGCGGAAGACTGCTCCGCGGC
AAAATGAGCAAAAGGAGTATACAAGACAGGTTCCTTTTTACAATTGGCTTGAACAATAA

Upstream 100 bases:

>100_bases
GACTGTTAAATCGCTTATATCCTTAAGAAAAAAGTCTCCTGATTGCAGGAGACTTTTTCACAGTCATCCATGATATACTG
GAAGGTAAGAGGTGTATCGA

Downstream 100 bases:

>100_bases
AGTGAAAGGTGAAGACATGCTAACAAAAAAACAGATCGAGTTTTGTTTAGACACAATCGGTGAAATGTTTCCGGATGCAG
AGTGCGAATTAGTCCATGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKKQHFIKMQDMGAVTIPNLLFMNYRELGLNETEFMLLLNIKMHVERGSFFPTPEELSKTMSIETEECMNMLRMFIQKGF
IYIEECEDQNGIKFEKYSLEPLWGKLFELLEMAEQKKLAEQNEGEQKSLYTIFEEEFARPLSPLECETLSIWLDQDHHDA
QLIKQALKEAVISGKLNFRYIDRILFEWKKNGVSTVEQAVNYSQRFRRKTAPRQNEQKEYTRQVPFYNWLEQ

Sequences:

>Translated_232_residues
MKKQHFIKMQDMGAVTIPNLLFMNYRELGLNETEFMLLLNIKMHVERGSFFPTPEELSKTMSIETEECMNMLRMFIQKGF
IYIEECEDQNGIKFEKYSLEPLWGKLFELLEMAEQKKLAEQNEGEQKSLYTIFEEEFARPLSPLECETLSIWLDQDHHDA
QLIKQALKEAVISGKLNFRYIDRILFEWKKNGVSTVEQAVNYSQRFRRKTAPRQNEQKEYTRQVPFYNWLEQ
>Mature_232_residues
MKKQHFIKMQDMGAVTIPNLLFMNYRELGLNETEFMLLLNIKMHVERGSFFPTPEELSKTMSIETEECMNMLRMFIQKGF
IYIEECEDQNGIKFEKYSLEPLWGKLFELLEMAEQKKLAEQNEGEQKSLYTIFEEEFARPLSPLECETLSIWLDQDHHDA
QLIKQALKEAVISGKLNFRYIDRILFEWKKNGVSTVEQAVNYSQRFRRKTAPRQNEQKEYTRQVPFYNWLEQ

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 27762; Mature: 27762

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQHFIKMQDMGAVTIPNLLFMNYRELGLNETEFMLLLNIKMHVERGSFFPTPEELSKT
CCCCCEEEHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHH
MSIETEECMNMLRMFIQKGFIYIEECEDQNGIKFEKYSLEPLWGKLFELLEMAEQKKLAE
HCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
QNEGEQKSLYTIFEEEFARPLSPLECETLSIWLDQDHHDAQLIKQALKEAVISGKLNFRY
HCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHH
IDRILFEWKKNGVSTVEQAVNYSQRFRRKTAPRQNEQKEYTRQVPFYNWLEQ
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHCC
>Mature Secondary Structure
MKKQHFIKMQDMGAVTIPNLLFMNYRELGLNETEFMLLLNIKMHVERGSFFPTPEELSKT
CCCCCEEEHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHH
MSIETEECMNMLRMFIQKGFIYIEECEDQNGIKFEKYSLEPLWGKLFELLEMAEQKKLAE
HCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
QNEGEQKSLYTIFEEEFARPLSPLECETLSIWLDQDHHDAQLIKQALKEAVISGKLNFRY
HCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHH
IDRILFEWKKNGVSTVEQAVNYSQRFRRKTAPRQNEQKEYTRQVPFYNWLEQ
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]