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The map label for this gene is ydzF [C]

Identifier: 52785898

GI number: 52785898

Start: 2096124

End: 2096474

Strand: Reverse

Name: ydzF [C]

Synonym: BLi02147

Alternate gene names: 52785898

Gene position: 2096474-2096124 (Counterclockwise)

Preceding gene: 52785899

Following gene: 52785896

Centisome position: 49.65

GC content: 45.87

Gene sequence:

>351_bases
ATGCAAATCCCATCCGGAAAAACCTGCGTTCCGACCGGTGTGGAACTTAAAGACACCGGCTTTGGCTATACGTTGTCATT
GATAAGCGGCAAATATAAAATAGTCATTCTATATTGGCTGTCTGAACGCGAAGTGATGCGGCATAATGAATTGAAGCGAA
GCATCGGCACCATTTCCTTCAAAACGCTAAGCATCATGTTAAAAGAGCTGGAAGCAGACGGCCTTATCATTCGCAGAGAA
TTTCCCCAAATCCCCCCAAAGGTTGAGTATTCATTATCTGAACGCGGACGCTCCATCGTGCCTTTGTTAAATATGATGTG
TGAGTGGGGGGAGAAAAACAGGCTGGGCTGA

Upstream 100 bases:

>100_bases
AATTTTTTTACCAGGCACCTTTCAAACTCCTCCCTTTACATCCTTTCAATCACATTACATAATGATCTATGATATAAGAG
TCAGAAGGAGAGTGTGCGTT

Downstream 100 bases:

>100_bases
CAGCCTGTTTCAGCCCGAATGATTTTCAGCAAAACCCCTTGCTACATATGATCAATAAAATGCAAATAATCTCGTGCGCT
TTTCTCCAATTCTCCTGCTC

Product: YdzF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MQIPSGKTCVPTGVELKDTGFGYTLSLISGKYKIVILYWLSEREVMRHNELKRSIGTISFKTLSIMLKELEADGLIIRRE
FPQIPPKVEYSLSERGRSIVPLLNMMCEWGEKNRLG

Sequences:

>Translated_116_residues
MQIPSGKTCVPTGVELKDTGFGYTLSLISGKYKIVILYWLSEREVMRHNELKRSIGTISFKTLSIMLKELEADGLIIRRE
FPQIPPKVEYSLSERGRSIVPLLNMMCEWGEKNRLG
>Mature_116_residues
MQIPSGKTCVPTGVELKDTGFGYTLSLISGKYKIVILYWLSEREVMRHNELKRSIGTISFKTLSIMLKELEADGLIIRRE
FPQIPPKVEYSLSERGRSIVPLLNMMCEWGEKNRLG

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13262; Mature: 13262

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIPSGKTCVPTGVELKDTGFGYTLSLISGKYKIVILYWLSEREVMRHNELKRSIGTISF
CCCCCCCEECCCCCEEECCCCCEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHCCCHH
KTLSIMLKELEADGLIIRREFPQIPPKVEYSLSERGRSIVPLLNMMCEWGEKNRLG
HHHHHHHHHHCCCCEEEECCCCCCCCCEEECHHHCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQIPSGKTCVPTGVELKDTGFGYTLSLISGKYKIVILYWLSEREVMRHNELKRSIGTISF
CCCCCCCEECCCCCEEECCCCCEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHCCCHH
KTLSIMLKELEADGLIIRREFPQIPPKVEYSLSERGRSIVPLLNMMCEWGEKNRLG
HHHHHHHHHHCCCCEEEECCCCCCCCCEEECHHHCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10086842; 11058132 [H]