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The map label for this gene is araD [H]

Identifier: 52785817

GI number: 52785817

Start: 2002644

End: 2003339

Strand: Direct

Name: araD [H]

Synonym: BLi02063

Alternate gene names: 52785817

Gene position: 2002644-2003339 (Clockwise)

Preceding gene: 52785816

Following gene: 52785818

Centisome position: 47.43

GC content: 41.81

Gene sequence:

>696_bases
GTGCTAGAACAACTGAAAGAAGAAGTATTACAAGCGAATTTGGACCTGCCTAAATACGGACTCGTGAAATACACATGGGG
AAATGCAAGTGCCATTGACCGTGAAACAGGTCTATTCGTTATCAAACCGAGCGGTGTTGATTATGAAACGATGAAAGCTA
GTGATATGGTGGTTGTTGATTTAGATGGCAATGTTGTTGAAGGAGAGCTGAGGCCTTCATCAGATACAGCGACTCACGCA
GTGCTTTATAAGCGCTACCCTGAAATTGGAGGAATTGTACACACTCATTCAACTTGGGCGACAATCTGGGCTCAAGCAGG
CCTTGATGTTCCAGCGATGGGGACCACTCATGCAGACACATTCTATGGTTCCGTACCATGTGCCCGTTACTTGACACAAG
AGGAGATTGATCGCGGTTACGAAGCAGAAACAGGTCATGTGATTATCGAAACATTTGAGGAGCGAGGGTTAGATATTTTA
GCTGTTCCCGGTGTCTTACTTCACGGTCATGGTCCATTTACTTGGGGCAAAGATGTAAAATCAGCCGTATTGAATAGTGT
GGTGTTGGAGGAAGTTGCGAAAATGAATTTATTTACAAGAGAATTAAATCTTTTTGCAAAAGAATTACCACAACGTATTT
TAGATAAACATTACTTACGAAAACACGGTAAAAATGCTTATTATGGTCAAAAGTAA

Upstream 100 bases:

>100_bases
TTAGATGTAGAAGGATTTGAAGCATTTATCGAACGGTACAAAAAAGGTTTAATGATTGAGCAGGCCGCTGTAGACCATTT
GATTTAATGGAGGGATTGAC

Downstream 100 bases:

>100_bases
TGTCAATTCTATCAAACTATCAATTATCCCATCAATTTAAGAAAAGAGGGTTATTATGTTAACAACAGGGAAAAAAGAAT
TTTGGTTTGTCGTAGGTTCA

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MLEQLKEEVLQANLDLPKYGLVKYTWGNASAIDRETGLFVIKPSGVDYETMKASDMVVVDLDGNVVEGELRPSSDTATHA
VLYKRYPEIGGIVHTHSTWATIWAQAGLDVPAMGTTHADTFYGSVPCARYLTQEEIDRGYEAETGHVIIETFEERGLDIL
AVPGVLLHGHGPFTWGKDVKSAVLNSVVLEEVAKMNLFTRELNLFAKELPQRILDKHYLRKHGKNAYYGQK

Sequences:

>Translated_231_residues
MLEQLKEEVLQANLDLPKYGLVKYTWGNASAIDRETGLFVIKPSGVDYETMKASDMVVVDLDGNVVEGELRPSSDTATHA
VLYKRYPEIGGIVHTHSTWATIWAQAGLDVPAMGTTHADTFYGSVPCARYLTQEEIDRGYEAETGHVIIETFEERGLDIL
AVPGVLLHGHGPFTWGKDVKSAVLNSVVLEEVAKMNLFTRELNLFAKELPQRILDKHYLRKHGKNAYYGQK
>Mature_231_residues
MLEQLKEEVLQANLDLPKYGLVKYTWGNASAIDRETGLFVIKPSGVDYETMKASDMVVVDLDGNVVEGELRPSSDTATHA
VLYKRYPEIGGIVHTHSTWATIWAQAGLDVPAMGTTHADTFYGSVPCARYLTQEEIDRGYEAETGHVIIETFEERGLDIL
AVPGVLLHGHGPFTWGKDVKSAVLNSVVLEEVAKMNLFTRELNLFAKELPQRILDKHYLRKHGKNAYYGQK

Specific function: L-arabinose catabolism; third step. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786247, Length=231, Percent_Identity=62.7705627705628, Blast_Score=305, Evalue=1e-84,
Organism=Escherichia coli, GI1790642, Length=230, Percent_Identity=61.304347826087, Blast_Score=300, Evalue=6e-83,
Organism=Escherichia coli, GI1790008, Length=231, Percent_Identity=62.7705627705628, Blast_Score=297, Evalue=3e-82,
Organism=Escherichia coli, GI1789164, Length=129, Percent_Identity=31.0077519379845, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: 136 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 25777; Mature: 25777

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEQLKEEVLQANLDLPKYGLVKYTWGNASAIDRETGLFVIKPSGVDYETMKASDMVVVD
CHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCHHHCCCCCEEEEE
LDGNVVEGELRPSSDTATHAVLYKRYPEIGGIVHTHSTWATIWAQAGLDVPAMGTTHADT
CCCCEEECCCCCCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCH
FYGSVPCARYLTQEEIDRGYEAETGHVIIETFEERGLDILAVPGVLLHGHGPFTWGKDVK
HCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCEEEECCCEEEECCCCCCCCHHHH
SAVLNSVVLEEVAKMNLFTRELNLFAKELPQRILDKHYLRKHGKNAYYGQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLEQLKEEVLQANLDLPKYGLVKYTWGNASAIDRETGLFVIKPSGVDYETMKASDMVVVD
CHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCHHHCCCCCEEEEE
LDGNVVEGELRPSSDTATHAVLYKRYPEIGGIVHTHSTWATIWAQAGLDVPAMGTTHADT
CCCCEEECCCCCCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCH
FYGSVPCARYLTQEEIDRGYEAETGHVIIETFEERGLDILAVPGVLLHGHGPFTWGKDVK
HCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCEEEECCCEEEECCCCCCCCHHHH
SAVLNSVVLEEVAKMNLFTRELNLFAKELPQRILDKHYLRKHGKNAYYGQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA