Click here to switch to the map view.

The map label for this gene is araA2

Identifier: 52785818

GI number: 52785818

Start: 2003395

End: 2004819

Strand: Direct

Name: araA2

Synonym: BLi02064

Alternate gene names: 52785818

Gene position: 2003395-2004819 (Clockwise)

Preceding gene: 52785817

Following gene: 52785819

Centisome position: 47.44

GC content: 42.32

Gene sequence:

>1425_bases
ATGTTAACAACAGGGAAAAAAGAATTTTGGTTTGTCGTAGGTTCACAGCATCTTTATGGGGAAGAAACGTTAGCGGAAGT
CAGAGCGCACGCGCAAGCCATGACCGATGCATTAAATGAAAGCGCTGTTTTGCCATATCCGCTTGTATTGCAAGATTTGG
CTGTTAATGCAGATAAAATCACTAGCATCATGAAAGAAGTAAATTATCGTGACGAAGTCGCCGGTGTTATCACTTGGATG
CATACTTTCTCGCCTGCGAAAATGTGGATTCGCGGAACAAAATTATTGCAAAAACCATTACTTCATTTAGCGACACAATT
TAATGAAAGTATTCCATGGCCAACGATTGACATGGACTTTATGAACCTCAACCAATCTGCTCATGGCGACCGTGAATACG
GTTTTATCAATGCCCGTTTGAAAAAACAAAATAAAGTTGTCGTAGGTTATTGGGAGCGACCTGAAGTGCAACAGCAAATT
GCAGAATGGATGGACGTAGCGGTTGCTTATAACGAAAGCTTCAACATCAAGGTCGCTCGGTTTGGTGACAACATGCGTAA
CGTTGCTGTTACTGAAGGGGATAAGATTGAAGCGCAAATTCAATTTGGCTGGACAGTTGATTACTTTGGCATCGGTGATC
TTGTTCAATACGTGAATGCGGTTACAGATGAAGAGATTAATCGTTTGTTTGCAGAATACGCAGACCTTTATGAATTTGAT
TATGGCACTTACAGTCGGGAAGATTGGGAGAAGAGTGTAAAAGTACAAGCAAGCTATGAAATCGCTATTAAACGTTTCCT
TGATGATGGTGGTTACAATGCTTTCACAACTAACTTTGAAGATTTATATGGAATGAAACAGCTTCCGGGTCTTGCCGTCC
AACGTTTGATGGCGCAAGGATATGGCTTTGCCGGTGAAGGAGATTGGAAAACTGCAGCGCTCGACCGCTTGCTCAAAGTG
ATGAGCCGTAACCAATCAACTGGTTTTATGGAAGATTACACATATGAATTGGCTGCCGGTCAAGAATCAATTCTTCAATC
GCATATGCTTGAAGTTGACCCATCTTTAGCAAGCAATAAACCAAAAATTATCGTCTCTCCATTAGGTATTGGTGATCGTG
AAGACCCGGCACGCCTAGTGTTCGACGGAAAAGCAGGAGATGGCGTGGTTGTTTCAATGGCAGACTTTGGTACGCACTAC
AAATTGTTGATTAACGAAGTTTCTGCATTTGAACCAACTGTTCCAGCACCAAACCTTCCAGTTGCACGGGTGCTTTGGGA
AGTGAAGCCTAACTTCCAAGATGGAGTGAAAGCATGGCTTGAGAATGGCGGCGGCCACCATACAGTTGTTTCATTGTTTT
TAACAACAGACCAAATGATCACTTATGCAAAGCTCGTTGACTTGGAATATGTAGTGATTAAGTAA

Upstream 100 bases:

>100_bases
TACTTACGAAAACACGGTAAAAATGCTTATTATGGTCAAAAGTAATGTCAATTCTATCAAACTATCAATTATCCCATCAA
TTTAAGAAAAGAGGGTTATT

Downstream 100 bases:

>100_bases
TGCCTCTAACCTCCGAGGAGGTGCTGCTTCCTTGGAGGTGAAAATAGGCATCAGTTTTCAAAATATTTATGATTTTGTAA
GCGTTATCGCGACATTCAGT

Product: L-arabinose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 474

Protein sequence:

>474_residues
MLTTGKKEFWFVVGSQHLYGEETLAEVRAHAQAMTDALNESAVLPYPLVLQDLAVNADKITSIMKEVNYRDEVAGVITWM
HTFSPAKMWIRGTKLLQKPLLHLATQFNESIPWPTIDMDFMNLNQSAHGDREYGFINARLKKQNKVVVGYWERPEVQQQI
AEWMDVAVAYNESFNIKVARFGDNMRNVAVTEGDKIEAQIQFGWTVDYFGIGDLVQYVNAVTDEEINRLFAEYADLYEFD
YGTYSREDWEKSVKVQASYEIAIKRFLDDGGYNAFTTNFEDLYGMKQLPGLAVQRLMAQGYGFAGEGDWKTAALDRLLKV
MSRNQSTGFMEDYTYELAAGQESILQSHMLEVDPSLASNKPKIIVSPLGIGDREDPARLVFDGKAGDGVVVSMADFGTHY
KLLINEVSAFEPTVPAPNLPVARVLWEVKPNFQDGVKAWLENGGGHHTVVSLFLTTDQMITYAKLVDLEYVVIK

Sequences:

>Translated_474_residues
MLTTGKKEFWFVVGSQHLYGEETLAEVRAHAQAMTDALNESAVLPYPLVLQDLAVNADKITSIMKEVNYRDEVAGVITWM
HTFSPAKMWIRGTKLLQKPLLHLATQFNESIPWPTIDMDFMNLNQSAHGDREYGFINARLKKQNKVVVGYWERPEVQQQI
AEWMDVAVAYNESFNIKVARFGDNMRNVAVTEGDKIEAQIQFGWTVDYFGIGDLVQYVNAVTDEEINRLFAEYADLYEFD
YGTYSREDWEKSVKVQASYEIAIKRFLDDGGYNAFTTNFEDLYGMKQLPGLAVQRLMAQGYGFAGEGDWKTAALDRLLKV
MSRNQSTGFMEDYTYELAAGQESILQSHMLEVDPSLASNKPKIIVSPLGIGDREDPARLVFDGKAGDGVVVSMADFGTHY
KLLINEVSAFEPTVPAPNLPVARVLWEVKPNFQDGVKAWLENGGGHHTVVSLFLTTDQMITYAKLVDLEYVVIK
>Mature_474_residues
MLTTGKKEFWFVVGSQHLYGEETLAEVRAHAQAMTDALNESAVLPYPLVLQDLAVNADKITSIMKEVNYRDEVAGVITWM
HTFSPAKMWIRGTKLLQKPLLHLATQFNESIPWPTIDMDFMNLNQSAHGDREYGFINARLKKQNKVVVGYWERPEVQQQI
AEWMDVAVAYNESFNIKVARFGDNMRNVAVTEGDKIEAQIQFGWTVDYFGIGDLVQYVNAVTDEEINRLFAEYADLYEFD
YGTYSREDWEKSVKVQASYEIAIKRFLDDGGYNAFTTNFEDLYGMKQLPGLAVQRLMAQGYGFAGEGDWKTAALDRLLKV
MSRNQSTGFMEDYTYELAAGQESILQSHMLEVDPSLASNKPKIIVSPLGIGDREDPARLVFDGKAGDGVVVSMADFGTHY
KLLINEVSAFEPTVPAPNLPVARVLWEVKPNFQDGVKAWLENGGGHHTVVSLFLTTDQMITYAKLVDLEYVVIK

Specific function: Catalyzes the conversion of L-arabinose to L-ribulose

COG id: COG2160

COG function: function code G; L-arabinose isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the arabinose isomerase family

Homologues:

Organism=Escherichia coli, GI1786248, Length=469, Percent_Identity=51.3859275053305, Blast_Score=510, Evalue=1e-146,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ARAA2_BACLD (Q65J10)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_079230.1
- RefSeq:   YP_091647.1
- HSSP:   P08202
- ProteinModelPortal:   Q65J10
- SMR:   Q65J10
- STRING:   Q65J10
- EnsemblBacteria:   EBBACT00000056396
- EnsemblBacteria:   EBBACT00000058500
- GeneID:   3031327
- GeneID:   3101457
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi02064
- KEGG:   bli:BL01182
- NMPDR:   fig|279010.5.peg.2763
- eggNOG:   COG2160
- GeneTree:   EBGT00050000001793
- HOGENOM:   HBG297198
- OMA:   DVAVAYN
- ProtClustDB:   PRK02929
- BioCyc:   BLIC279010-1:BLI02064-MONOMER
- BioCyc:   BLIC279010:BL01182-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00519
- InterPro:   IPR004216
- InterPro:   IPR009015
- InterPro:   IPR003762
- PIRSF:   PIRSF001478
- ProDom:   PD018364

Pfam domain/function: PF02610 Arabinose_Isome; SSF50443 Fuc_isomerase_C; SSF53743 Fuc_isomerase_N

EC number: =5.3.1.4

Molecular weight: Translated: 53505; Mature: 53505

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTTGKKEFWFVVGSQHLYGEETLAEVRAHAQAMTDALNESAVLPYPLVLQDLAVNADKI
CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHH
TSIMKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQFNESIPWPTIDMDF
HHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHH
MNLNQSAHGDREYGFINARLKKQNKVVVGYWERPEVQQQIAEWMDVAVAYNESFNIKVAR
HCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHEECCCCEEEEEE
FGDNMRNVAVTEGDKIEAQIQFGWTVDYFGIGDLVQYVNAVTDEEINRLFAEYADLYEFD
ECCCCCEEEEECCCEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YGTYSREDWEKSVKVQASYEIAIKRFLDDGGYNAFTTNFEDLYGMKQLPGLAVQRLMAQG
CCCCCHHHHHHCEEEEEHHHHHHHHHHCCCCCCCEECCHHHHCCHHHCCHHHHHHHHHHC
YGFAGEGDWKTAALDRLLKVMSRNQSTGFMEDYTYELAAGQESILQSHMLEVDPSLASNK
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
PKIIVSPLGIGDREDPARLVFDGKAGDGVVVSMADFGTHYKLLINEVSAFEPTVPAPNLP
CEEEEEECCCCCCCCCCEEEEECCCCCCEEEEEHHCCCHHHHHHHHHHHCCCCCCCCCCC
VARVLWEVKPNFQDGVKAWLENGGGHHTVVSLFLTTDQMITYAKLVDLEYVVIK
HHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHCEEEEEEC
>Mature Secondary Structure
MLTTGKKEFWFVVGSQHLYGEETLAEVRAHAQAMTDALNESAVLPYPLVLQDLAVNADKI
CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHH
TSIMKEVNYRDEVAGVITWMHTFSPAKMWIRGTKLLQKPLLHLATQFNESIPWPTIDMDF
HHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHH
MNLNQSAHGDREYGFINARLKKQNKVVVGYWERPEVQQQIAEWMDVAVAYNESFNIKVAR
HCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHEECCCCEEEEEE
FGDNMRNVAVTEGDKIEAQIQFGWTVDYFGIGDLVQYVNAVTDEEINRLFAEYADLYEFD
ECCCCCEEEEECCCEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YGTYSREDWEKSVKVQASYEIAIKRFLDDGGYNAFTTNFEDLYGMKQLPGLAVQRLMAQG
CCCCCHHHHHHCEEEEEHHHHHHHHHHCCCCCCCEECCHHHHCCHHHCCHHHHHHHHHHC
YGFAGEGDWKTAALDRLLKVMSRNQSTGFMEDYTYELAAGQESILQSHMLEVDPSLASNK
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
PKIIVSPLGIGDREDPARLVFDGKAGDGVVVSMADFGTHYKLLINEVSAFEPTVPAPNLP
CEEEEEECCCCCCCCCCEEEEECCCCCCEEEEEHHCCCHHHHHHHHHHHCCCCCCCCCCC
VARVLWEVKPNFQDGVKAWLENGGGHHTVVSLFLTTDQMITYAKLVDLEYVVIK
HHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA