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The map label for this gene is ybfI1 [H]

Identifier: 52784077

GI number: 52784077

Start: 227318

End: 227626

Strand: Reverse

Name: ybfI1 [H]

Synonym: BLi00252

Alternate gene names: 52784077

Gene position: 227626-227318 (Counterclockwise)

Preceding gene: 52784078

Following gene: 52784076

Centisome position: 5.39

GC content: 45.31

Gene sequence:

>309_bases
TTGGAATCCCATTACCAGGAAAACATTACGCTTGAACATTTAAGCAGGCTGACAGGCTGGAGCAAGTATCACCTCCTGCG
GTCGTTTACGAAGCAGAAAGGAATTTCCCCCTACAGCTACTTGGAAACCGTTCGTATCAATCATGCGAAGAAGCTGTTGG
AAGAAGGCGTAAAACCAATCGATGCGGCTTTCCAAACAGGCTTCAGTGATCAGAGCCATATGACGAAATTTTTCAAGCGG
CAGGTCGGGCTGACGCCGAAACAATATATGAAAATTTTTGAATATGACAGGCAGGAGATCAAAGGATGA

Upstream 100 bases:

>100_bases
ATATTGCAAAAAGAAAAAGCCTTGAAAAAAGAGGAGCTTTGTCACGTTTCTTGAAAATGCACCTGAACCGTCCGACGAAG
TCAAAGCGGTGTGCAGTTAT

Downstream 100 bases:

>100_bases
AGACAAGACGCGAAACCGCCGGACACCTCGCAGCTGTGATCACGATCATCATCTGGGGTACTACTTTTGTCTCAACAAAG
GTGCTGCTCGAGGATTTCCC

Product: YbfI1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MESHYQENITLEHLSRLTGWSKYHLLRSFTKQKGISPYSYLETVRINHAKKLLEEGVKPIDAAFQTGFSDQSHMTKFFKR
QVGLTPKQYMKIFEYDRQEIKG

Sequences:

>Translated_102_residues
MESHYQENITLEHLSRLTGWSKYHLLRSFTKQKGISPYSYLETVRINHAKKLLEEGVKPIDAAFQTGFSDQSHMTKFFKR
QVGLTPKQYMKIFEYDRQEIKG
>Mature_102_residues
MESHYQENITLEHLSRLTGWSKYHLLRSFTKQKGISPYSYLETVRINHAKKLLEEGVKPIDAAFQTGFSDQSHMTKFFKR
QVGLTPKQYMKIFEYDRQEIKG

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 12086; Mature: 12086

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESHYQENITLEHLSRLTGWSKYHLLRSFTKQKGISPYSYLETVRINHAKKLLEEGVKPI
CCCCHHHCCCHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHH
DAAFQTGFSDQSHMTKFFKRQVGLTPKQYMKIFEYDRQEIKG
HHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MESHYQENITLEHLSRLTGWSKYHLLRSFTKQKGISPYSYLETVRINHAKKLLEEGVKPI
CCCCHHHCCCHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHH
DAAFQTGFSDQSHMTKFFKRQVGLTPKQYMKIFEYDRQEIKG
HHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]