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The map label for this gene is ybfI2 [H]

Identifier: 52784078

GI number: 52784078

Start: 227673

End: 228113

Strand: Reverse

Name: ybfI2 [H]

Synonym: BLi00253

Alternate gene names: 52784078

Gene position: 228113-227673 (Counterclockwise)

Preceding gene: 52784081

Following gene: 52784077

Centisome position: 5.4

GC content: 45.12

Gene sequence:

>441_bases
ATGCGAAATGAAACCCGCACGCTTTTCCTCGACCCTGATCTAAATGTTGAAGCCTACCGCTTTAAAGGCATTATCCAGAA
GTTTCCGAATCACTTCCACGAGTATTTTGTGATTGGTTTTATTGAGAAGGGGCAGCGCTATTTGCTTTGCAAGGGAGAAG
AATACATCATTAATCAAGGCGCTCTCGTGCTTTTCAATCCTTATGACACGCACAGTTGCGAGCAGATTGACGGAAAGGCG
CTCGATTACCGCTGCATTAACGTGATGCCTGATGTTATGAGAGGATTTGTGAAGGAGATCACTGGGGCCGACAGCCTCCC
ATATTTCACGGAGAATGTCTTGTTCCGCCATGAGCTGAACGCCAGCTTGAAGGAGCTACACATTCAAATATTGCAAAAAG
AAAAAGCCTTGAAAAAAGAGGAGCTTTGTCACGTTTCTTGA

Upstream 100 bases:

>100_bases
TTTTCTTCCATTGTATCCTTTTTTTCATTAAGCAACATCATACAAGAAATCTCCCATAAACATGATAAACTTAAACATCA
TCACACCAAGGAGGCCCGCC

Downstream 100 bases:

>100_bases
AAATGCACCTGAACCGTCCGACGAAGTCAAAGCGGTGTGCAGTTATTTGGAATCCCATTACCAGGAAAACATTACGCTTG
AACATTTAAGCAGGCTGACA

Product: YbfI2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MRNETRTLFLDPDLNVEAYRFKGIIQKFPNHFHEYFVIGFIEKGQRYLLCKGEEYIINQGALVLFNPYDTHSCEQIDGKA
LDYRCINVMPDVMRGFVKEITGADSLPYFTENVLFRHELNASLKELHIQILQKEKALKKEELCHVS

Sequences:

>Translated_146_residues
MRNETRTLFLDPDLNVEAYRFKGIIQKFPNHFHEYFVIGFIEKGQRYLLCKGEEYIINQGALVLFNPYDTHSCEQIDGKA
LDYRCINVMPDVMRGFVKEITGADSLPYFTENVLFRHELNASLKELHIQILQKEKALKKEELCHVS
>Mature_146_residues
MRNETRTLFLDPDLNVEAYRFKGIIQKFPNHFHEYFVIGFIEKGQRYLLCKGEEYIINQGALVLFNPYDTHSCEQIDGKA
LDYRCINVMPDVMRGFVKEITGADSLPYFTENVLFRHELNASLKELHIQILQKEKALKKEELCHVS

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 17130; Mature: 17130

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNETRTLFLDPDLNVEAYRFKGIIQKFPNHFHEYFVIGFIEKGQRYLLCKGEEYIINQG
CCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHEEEEEEEECCCEEEEECCCEEEEECC
ALVLFNPYDTHSCEQIDGKALDYRCINVMPDVMRGFVKEITGADSLPYFTENVLFRHELN
CEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
ASLKELHIQILQKEKALKKEELCHVS
CHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRNETRTLFLDPDLNVEAYRFKGIIQKFPNHFHEYFVIGFIEKGQRYLLCKGEEYIINQG
CCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHEEEEEEEECCCEEEEECCCEEEEECC
ALVLFNPYDTHSCEQIDGKALDYRCINVMPDVMRGFVKEITGADSLPYFTENVLFRHELN
CEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
ASLKELHIQILQKEKALKKEELCHVS
CHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]