Click here to switch to the map view.

The map label for this gene is yabC [H]

Identifier: 52783893

GI number: 52783893

Start: 48232

End: 49068

Strand: Direct

Name: yabC [H]

Synonym: BLi00049

Alternate gene names: 52783893

Gene position: 48232-49068 (Clockwise)

Preceding gene: 52783892

Following gene: 52783895

Centisome position: 1.14

GC content: 47.43

Gene sequence:

>837_bases
ATGGGTATGTTATATCTCGTACCGACTCCCATCGGCAATTTAGAGGATATGACATTTCGGGCGGTTTCTGTGTTAAAAGA
GGCGGACATTATCGCGGCGGAGGATACGAGGCAGACGAAGAAATTGTGCCATGTGTATGAAATTGAGACACAGCTTGTCA
GCTACCATGAACACAATAAAGAAAGCAGCGGACATAAAATTTTGGAATGGCTGAAAGAAGGAAAAAACGTCGCATTGGTC
AGTGACGCCGGAATGCCGACAATATCTGACCCCGGGGCTGAAATCGTCCGCGATTTTATCGAAATGGGCGGCTATGTCGT
ACCCCTGCCCGGTGCAAATGCGGCTTTGACCGCACTGATTGCCTCAGGCATTGCGCCGCAGCCGTTTTTCTTTTTCGGCT
TTTTGGACCGCAGCAAACGGGAAAGGAAAAAACAGCTCGAGGCTTTGAAGAACAGACAGGAAACGATGATTTTTTACGAG
TCGCCGCATCGGCTGAAAGAAACCTTGGCGGCCATCAGAGAGGTATTCGGCAATCGGCAAATCGCATTGACAAGGGAACT
CACGAAAAAATTCGAAGAATTTATCAGAGGTTCGATCGAAGAAGCACTCACATGGTCTGAACAGGAACAGGTGCGCGGAG
AGTTTTGCCTTGTGATCGAAGGAAGCCGTGAAGAAACGATTGAAGAGGCGGTCTGGTGGGAGCATCTTTCAGAAAAAGAA
CATGTCGAGCATTATATCAGCGAAGGATATCCTTCAAAAGAAGCCATTAAAAAAACCGCGGTTGACCGCGGCGTTCCGAA
ACGGAAAATTTATGACGCTTACCATATTCAAAACTAA

Upstream 100 bases:

>100_bases
AAAAAATTATCGAGAAAAAACAAAGAACGTTATATAGAAGAAAAAAGACGGGAGGGTGTTGATTATCAACCGGCAAAAGA
GTTTTGACCAAAAATCAGAC

Downstream 100 bases:

>100_bases
AAAACCGCCCTTGCTTCGGCAAGAGCGGTTTTTGTATAATCAAAATAATTATTTTTGAGATTGAAGTTGTGCTTGAATTT
CGTTAATGATTTGCTCAGCG

Product: YabC

Products: NA

Alternate protein names: 16S rRNA 2'-O-ribose C1402 methyltransferase; rRNA (cytidine-2'-O-)-methyltransferase RsmI [H]

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MGMLYLVPTPIGNLEDMTFRAVSVLKEADIIAAEDTRQTKKLCHVYEIETQLVSYHEHNKESSGHKILEWLKEGKNVALV
SDAGMPTISDPGAEIVRDFIEMGGYVVPLPGANAALTALIASGIAPQPFFFFGFLDRSKRERKKQLEALKNRQETMIFYE
SPHRLKETLAAIREVFGNRQIALTRELTKKFEEFIRGSIEEALTWSEQEQVRGEFCLVIEGSREETIEEAVWWEHLSEKE
HVEHYISEGYPSKEAIKKTAVDRGVPKRKIYDAYHIQN

Sequences:

>Translated_278_residues
MGMLYLVPTPIGNLEDMTFRAVSVLKEADIIAAEDTRQTKKLCHVYEIETQLVSYHEHNKESSGHKILEWLKEGKNVALV
SDAGMPTISDPGAEIVRDFIEMGGYVVPLPGANAALTALIASGIAPQPFFFFGFLDRSKRERKKQLEALKNRQETMIFYE
SPHRLKETLAAIREVFGNRQIALTRELTKKFEEFIRGSIEEALTWSEQEQVRGEFCLVIEGSREETIEEAVWWEHLSEKE
HVEHYISEGYPSKEAIKKTAVDRGVPKRKIYDAYHIQN
>Mature_277_residues
GMLYLVPTPIGNLEDMTFRAVSVLKEADIIAAEDTRQTKKLCHVYEIETQLVSYHEHNKESSGHKILEWLKEGKNVALVS
DAGMPTISDPGAEIVRDFIEMGGYVVPLPGANAALTALIASGIAPQPFFFFGFLDRSKRERKKQLEALKNRQETMIFYES
PHRLKETLAAIREVFGNRQIALTRELTKKFEEFIRGSIEEALTWSEQEQVRGEFCLVIEGSREETIEEAVWWEHLSEKEH
VEHYISEGYPSKEAIKKTAVDRGVPKRKIYDAYHIQN

Specific function: Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA [H]

COG id: COG0313

COG function: function code R; Predicted methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmI family [H]

Homologues:

Organism=Escherichia coli, GI1789535, Length=227, Percent_Identity=45.374449339207, Blast_Score=195, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000878
- InterPro:   IPR014777
- InterPro:   IPR014776
- InterPro:   IPR008189
- InterPro:   IPR018063 [H]

Pfam domain/function: PF00590 TP_methylase [H]

EC number: NA

Molecular weight: Translated: 31799; Mature: 31667

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS01296 UPF0011

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMLYLVPTPIGNLEDMTFRAVSVLKEADIIAAEDTRQTKKLCHVYEIETQLVSYHEHNK
CCEEEEECCCCCCCHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCC
ESSGHKILEWLKEGKNVALVSDAGMPTISDPGAEIVRDFIEMGGYVVPLPGANAALTALI
CCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHH
ASGIAPQPFFFFGFLDRSKRERKKQLEALKNRQETMIFYESPHRLKETLAAIREVFGNRQ
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
IALTRELTKKFEEFIRGSIEEALTWSEQEQVRGEFCLVIEGSREETIEEAVWWEHLSEKE
EEHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCHHH
HVEHYISEGYPSKEAIKKTAVDRGVPKRKIYDAYHIQN
HHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
GMLYLVPTPIGNLEDMTFRAVSVLKEADIIAAEDTRQTKKLCHVYEIETQLVSYHEHNK
CEEEEECCCCCCCHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCC
ESSGHKILEWLKEGKNVALVSDAGMPTISDPGAEIVRDFIEMGGYVVPLPGANAALTALI
CCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEECCCCHHHHHHHH
ASGIAPQPFFFFGFLDRSKRERKKQLEALKNRQETMIFYESPHRLKETLAAIREVFGNRQ
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
IALTRELTKKFEEFIRGSIEEALTWSEQEQVRGEFCLVIEGSREETIEEAVWWEHLSEKE
EEHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCHHH
HVEHYISEGYPSKEAIKKTAVDRGVPKRKIYDAYHIQN
HHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]