Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
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Accession | NC_006177 |
Length | 3,566,135 |
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The map label for this gene is yabP [H]
Identifier: 51894363
GI number: 51894363
Start: 3442300
End: 3442596
Strand: Reverse
Name: yabP [H]
Synonym: STH3228
Alternate gene names: 51894363
Gene position: 3442596-3442300 (Counterclockwise)
Preceding gene: 51894364
Following gene: 51894362
Centisome position: 96.54
GC content: 67.0
Gene sequence:
>297_bases GTGGAGGAGAGGACGCACGAGGGCGCCACCCACTCCCTCAGCATCGCCAATCGGGAGCGGGTACAGATCACCGGCGTGGT GGCCGTGGACAGCTTCGACGATGCAGAGGTCAACCTGGAGACCGAGATGGGGCTGCTGACCATCCGGGGAGAGGAACTGC AGATCAAGCAGCTCGACCTGGAGAAGGGCCAGTTCGAGATTTCGGGCTTCGTGTCGGCGCTGCAGTACGCCAGCCCGAGG CAGCGGACCGGCCGGCAGCAGCGGGGCCGGTCGTTCCTGGAGCGGCTGCTCCGGTAG
Upstream 100 bases:
>100_bases GCGGACCGGCGGTCCGTTTTCTTACATAACGCCCCGGGTGGCGGCATAGGGATGGGACAGGGTCCCCCAGATCCAAGGGG CGCAGAGGAGGTCGATCCGG
Downstream 100 bases:
>100_bases CGGGCGCGCAGAGCGAGTCGGGGGCGGGGAGGCGGTCCGGTGCTGCGGATGGAGCTGCAGTTCTACGCGCTGTTTATGAC GGTGCTCAGCGGCATCGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 98; Mature: 98
Protein sequence:
>98_residues MEERTHEGATHSLSIANRERVQITGVVAVDSFDDAEVNLETEMGLLTIRGEELQIKQLDLEKGQFEISGFVSALQYASPR QRTGRQQRGRSFLERLLR
Sequences:
>Translated_98_residues MEERTHEGATHSLSIANRERVQITGVVAVDSFDDAEVNLETEMGLLTIRGEELQIKQLDLEKGQFEISGFVSALQYASPR QRTGRQQRGRSFLERLLR >Mature_98_residues MEERTHEGATHSLSIANRERVQITGVVAVDSFDDAEVNLETEMGLLTIRGEELQIKQLDLEKGQFEISGFVSALQYASPR QRTGRQQRGRSFLERLLR
Specific function: Required for sporulation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Forespore outer membrane. Note=Forms a ring around the forespore [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012504 - InterPro: IPR022476 - ProDom: PD067726 [H]
Pfam domain/function: PF07873 YabP [H]
EC number: NA
Molecular weight: Translated: 11146; Mature: 11146
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEERTHEGATHSLSIANRERVQITGVVAVDSFDDAEVNLETEMGLLTIRGEELQIKQLDL CCCCCCCCCCEEEEECCCCEEEEEEEEEECCCCCCEEEEECCCEEEEEECCEEEEEEECC EKGQFEISGFVSALQYASPRQRTGRQQRGRSFLERLLR CCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCC >Mature Secondary Structure MEERTHEGATHSLSIANRERVQITGVVAVDSFDDAEVNLETEMGLLTIRGEELQIKQLDL CCCCCCCCCCEEEEECCCCEEEEEEEEEECCCCCCEEEEECCCEEEEEECCEEEEEEECC EKGQFEISGFVSALQYASPRQRTGRQQRGRSFLERLLR CCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]