Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

Click here to switch to the map view.

The map label for this gene is yabP [H]

Identifier: 51894363

GI number: 51894363

Start: 3442300

End: 3442596

Strand: Reverse

Name: yabP [H]

Synonym: STH3228

Alternate gene names: 51894363

Gene position: 3442596-3442300 (Counterclockwise)

Preceding gene: 51894364

Following gene: 51894362

Centisome position: 96.54

GC content: 67.0

Gene sequence:

>297_bases
GTGGAGGAGAGGACGCACGAGGGCGCCACCCACTCCCTCAGCATCGCCAATCGGGAGCGGGTACAGATCACCGGCGTGGT
GGCCGTGGACAGCTTCGACGATGCAGAGGTCAACCTGGAGACCGAGATGGGGCTGCTGACCATCCGGGGAGAGGAACTGC
AGATCAAGCAGCTCGACCTGGAGAAGGGCCAGTTCGAGATTTCGGGCTTCGTGTCGGCGCTGCAGTACGCCAGCCCGAGG
CAGCGGACCGGCCGGCAGCAGCGGGGCCGGTCGTTCCTGGAGCGGCTGCTCCGGTAG

Upstream 100 bases:

>100_bases
GCGGACCGGCGGTCCGTTTTCTTACATAACGCCCCGGGTGGCGGCATAGGGATGGGACAGGGTCCCCCAGATCCAAGGGG
CGCAGAGGAGGTCGATCCGG

Downstream 100 bases:

>100_bases
CGGGCGCGCAGAGCGAGTCGGGGGCGGGGAGGCGGTCCGGTGCTGCGGATGGAGCTGCAGTTCTACGCGCTGTTTATGAC
GGTGCTCAGCGGCATCGGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MEERTHEGATHSLSIANRERVQITGVVAVDSFDDAEVNLETEMGLLTIRGEELQIKQLDLEKGQFEISGFVSALQYASPR
QRTGRQQRGRSFLERLLR

Sequences:

>Translated_98_residues
MEERTHEGATHSLSIANRERVQITGVVAVDSFDDAEVNLETEMGLLTIRGEELQIKQLDLEKGQFEISGFVSALQYASPR
QRTGRQQRGRSFLERLLR
>Mature_98_residues
MEERTHEGATHSLSIANRERVQITGVVAVDSFDDAEVNLETEMGLLTIRGEELQIKQLDLEKGQFEISGFVSALQYASPR
QRTGRQQRGRSFLERLLR

Specific function: Required for sporulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Forespore outer membrane. Note=Forms a ring around the forespore [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012504
- InterPro:   IPR022476
- ProDom:   PD067726 [H]

Pfam domain/function: PF07873 YabP [H]

EC number: NA

Molecular weight: Translated: 11146; Mature: 11146

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEERTHEGATHSLSIANRERVQITGVVAVDSFDDAEVNLETEMGLLTIRGEELQIKQLDL
CCCCCCCCCCEEEEECCCCEEEEEEEEEECCCCCCEEEEECCCEEEEEECCEEEEEEECC
EKGQFEISGFVSALQYASPRQRTGRQQRGRSFLERLLR
CCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MEERTHEGATHSLSIANRERVQITGVVAVDSFDDAEVNLETEMGLLTIRGEELQIKQLDL
CCCCCCCCCCEEEEECCCCEEEEEEEEEECCCCCCEEEEECCCEEEEEECCEEEEEEECC
EKGQFEISGFVSALQYASPRQRTGRQQRGRSFLERLLR
CCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]