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The map label for this gene is xylR-1 [H]

Identifier: 51598947

GI number: 51598947

Start: 735998

End: 737206

Strand: Direct

Name: xylR-1 [H]

Synonym: BG0716

Alternate gene names: 51598947

Gene position: 735998-737206 (Clockwise)

Preceding gene: 51598946

Following gene: 51598948

Centisome position: 81.39

GC content: 28.62

Gene sequence:

>1209_bases
ATGCAGGGTGAAAATATGGTTTCAATTAGGGGCGGAAATAGAAGAAAAATTCTTCTTAGTTTGAAAAATATGCAATATTC
AAGAACAGACTTAGCTCGTAAGTTAACCTTAACAAATGCTGCGGTTACTATTTTGACTAATCAAATGATAAAAGAAAATC
TTTTGATTGAAGTTGGTTCTAGAGTGTCTGATATTAAAAAACATGGACGAAAAGAAATACTTCTTGATATTAATAAAGAT
TATGCGTATTCAATGGGAGTTATTATTTCTAGCAATTATTTTCAAATAGGTATTGCAAATCTTAAATGCGAGGTTTTAAT
AAGCGAGACTCATTCTTTTGAGCCCCCAGTTAGTGCTTATGAGATTTTAGAAAAAATAAAAGATCATATGATAGAAATTA
TTTGGAAACATAATTTTTCAAGAGATAAGTTTATTGGTTTGGGCTTTAGTATTACAGGGCTAATAAAAGATAAAGAATCA
GGCATTGTTAATGACAGTTATGGAGCATGGATTGAAAAAGATGTCCCTGTTAAGAGAATACTTGAGGAATATTTTTCACT
TACAGTTTATCTTGAAAGTTATGTTAAAAATTTATCTCTTGCTGAATTTATGGGCAAAAATATAGATAATATTATGTTTT
TTGACTATACAGATACTGCTGAACTTTCGATTTGGTCAGATGGCAATGTTTATCCCGGTTTTAATAATAAGTCAGGTATG
GTTAGTCACATGATAATTGATTACGAAGGAGAAAAAAATTGTCCAACTTGTGGCAATAAGGGTTGTGTTAATATGTTAAT
ATCTAACTTTGCTTTGCAGAGATTGATTTCAAAAGAGTTTATGAATGGTGAGATTCCTGAGCTTTATGAAAAGTATGAGG
GTAGATTGAAAAAGGTTACAATATATGATGTTTTCTCTCTTTATGAAAAATATGATTTTGTAAATAAAATTATGCAAGAT
ACGGTTAAATATTTAGCAATAATTATTATCAATATTCAAAGAATGCTTGATTTTAATTATTTAGTACTCTATGGTCAAAG
TTTTAAATTAAAAGCTTTTTTTGATTCGTTAAAAGAAGAGATTAAAAAGCGCAATAAAGAGAATATAATATTAAAGCTTA
GTTCATTAGACACCGAAGTTTCTGTTGTTGGACCCGCTTCTAGTGTTATTTTTAATAAATTTTATTTGACAGGAGGAGAT
ATTGATTAA

Upstream 100 bases:

>100_bases
AGGCATGTTTGTCTTTTAGGGATAGATAGAATATTATATTGTTTTTTTTGTATGATATTTTATAATATTTTTTTATTTTA
AAAAACAAAGGAGGCCTATT

Downstream 100 bases:

>100_bases
TATTGCCTTTTTTTGTATCTTATATTTGATAAGATTATTTTTGAGAATAAGGGTTGTTTTTAATGCTTGAAAGTTTGGGG
TCAAATTTTAAAAATTTTAT

Product: xylose operon regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MQGENMVSIRGGNRRKILLSLKNMQYSRTDLARKLTLTNAAVTILTNQMIKENLLIEVGSRVSDIKKHGRKEILLDINKD
YAYSMGVIISSNYFQIGIANLKCEVLISETHSFEPPVSAYEILEKIKDHMIEIIWKHNFSRDKFIGLGFSITGLIKDKES
GIVNDSYGAWIEKDVPVKRILEEYFSLTVYLESYVKNLSLAEFMGKNIDNIMFFDYTDTAELSIWSDGNVYPGFNNKSGM
VSHMIIDYEGEKNCPTCGNKGCVNMLISNFALQRLISKEFMNGEIPELYEKYEGRLKKVTIYDVFSLYEKYDFVNKIMQD
TVKYLAIIIINIQRMLDFNYLVLYGQSFKLKAFFDSLKEEIKKRNKENIILKLSSLDTEVSVVGPASSVIFNKFYLTGGD
ID

Sequences:

>Translated_402_residues
MQGENMVSIRGGNRRKILLSLKNMQYSRTDLARKLTLTNAAVTILTNQMIKENLLIEVGSRVSDIKKHGRKEILLDINKD
YAYSMGVIISSNYFQIGIANLKCEVLISETHSFEPPVSAYEILEKIKDHMIEIIWKHNFSRDKFIGLGFSITGLIKDKES
GIVNDSYGAWIEKDVPVKRILEEYFSLTVYLESYVKNLSLAEFMGKNIDNIMFFDYTDTAELSIWSDGNVYPGFNNKSGM
VSHMIIDYEGEKNCPTCGNKGCVNMLISNFALQRLISKEFMNGEIPELYEKYEGRLKKVTIYDVFSLYEKYDFVNKIMQD
TVKYLAIIIINIQRMLDFNYLVLYGQSFKLKAFFDSLKEEIKKRNKENIILKLSSLDTEVSVVGPASSVIFNKFYLTGGD
ID
>Mature_402_residues
MQGENMVSIRGGNRRKILLSLKNMQYSRTDLARKLTLTNAAVTILTNQMIKENLLIEVGSRVSDIKKHGRKEILLDINKD
YAYSMGVIISSNYFQIGIANLKCEVLISETHSFEPPVSAYEILEKIKDHMIEIIWKHNFSRDKFIGLGFSITGLIKDKES
GIVNDSYGAWIEKDVPVKRILEEYFSLTVYLESYVKNLSLAEFMGKNIDNIMFFDYTDTAELSIWSDGNVYPGFNNKSGM
VSHMIIDYEGEKNCPTCGNKGCVNMLISNFALQRLISKEFMNGEIPELYEKYEGRLKKVTIYDVFSLYEKYDFVNKIMQD
TVKYLAIIIINIQRMLDFNYLVLYGQSFKLKAFFDSLKEEIKKRNKENIILKLSSLDTEVSVVGPASSVIFNKFYLTGGD
ID

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=255, Percent_Identity=25.4901960784314, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787878, Length=245, Percent_Identity=20.4081632653061, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 46143; Mature: 46143

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGENMVSIRGGNRRKILLSLKNMQYSRTDLARKLTLTNAAVTILTNQMIKENLLIEVGS
CCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RVSDIKKHGRKEILLDINKDYAYSMGVIISSNYFQIGIANLKCEVLISETHSFEPPVSAY
HHHHHHHCCCEEEEEECCCCCEEEEEEEEECCEEEEEEECEEEEEEEECCCCCCCCHHHH
EILEKIKDHMIEIIWKHNFSRDKFIGLGFSITGLIKDKESGIVNDSYGAWIEKDVPVKRI
HHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHH
LEEYFSLTVYLESYVKNLSLAEFMGKNIDNIMFFDYTDTAELSIWSDGNVYPGFNNKSGM
HHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCC
VSHMIIDYEGEKNCPTCGNKGCVNMLISNFALQRLISKEFMNGEIPELYEKYEGRLKKVT
EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEE
IYDVFSLYEKYDFVNKIMQDTVKYLAIIIINIQRMLDFNYLVLYGQSFKLKAFFDSLKEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEHHHHHHHHHHH
IKKRNKENIILKLSSLDTEVSVVGPASSVIFNKFYLTGGDID
HHHCCCCEEEEEEECCCCEEEEECCCHHHHEEEEEEECCCCC
>Mature Secondary Structure
MQGENMVSIRGGNRRKILLSLKNMQYSRTDLARKLTLTNAAVTILTNQMIKENLLIEVGS
CCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RVSDIKKHGRKEILLDINKDYAYSMGVIISSNYFQIGIANLKCEVLISETHSFEPPVSAY
HHHHHHHCCCEEEEEECCCCCEEEEEEEEECCEEEEEEECEEEEEEEECCCCCCCCHHHH
EILEKIKDHMIEIIWKHNFSRDKFIGLGFSITGLIKDKESGIVNDSYGAWIEKDVPVKRI
HHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHH
LEEYFSLTVYLESYVKNLSLAEFMGKNIDNIMFFDYTDTAELSIWSDGNVYPGFNNKSGM
HHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCC
VSHMIIDYEGEKNCPTCGNKGCVNMLISNFALQRLISKEFMNGEIPELYEKYEGRLKKVT
EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEE
IYDVFSLYEKYDFVNKIMQDTVKYLAIIIINIQRMLDFNYLVLYGQSFKLKAFFDSLKEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEHHHHHHHHHHH
IKKRNKENIILKLSSLDTEVSVVGPASSVIFNKFYLTGGDID
HHHCCCCEEEEEEECCCCEEEEECCCHHHHEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]