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The map label for this gene is tlyA [H]

Identifier: 51598761

GI number: 51598761

Start: 513997

End: 514716

Strand: Direct

Name: tlyA [H]

Synonym: BG0518

Alternate gene names: 51598761

Gene position: 513997-514716 (Clockwise)

Preceding gene: 51598760

Following gene: 51598763

Centisome position: 56.84

GC content: 25.69

Gene sequence:

>720_bases
ATGATTTTGATTTTAACAGGGAATGTATATGTAAATTCTCATAAAGAAAAAAATCCTAAAATCTTAATAAACAAAACAAG
TAAAATAGATTTAGTTGAGAATGCTTGTCAAACATTTGTATCAAGGGGAGGTTACAAGCTTTTAGAATCTCTTAAAGATT
TTGAGATCGAAGTTAAAAATAAAATTTGTGTTGATGTTGGCTCTTCAACTGGTGGTTTTACTGATTGTTTATTGCAGTGT
GGTGCCAATTTTGTTTATTCAGTTGATGTAGGCATTAATCAACTTTCTTATAAATTGAGAATTGATCCAAGAGTTAAAGT
TTTAGAGAGAACTAATATTTTTGATGTTACAGAATTTAAAATTGTTCCTAATTTTGCGGTTGTAGATGTTTCTTTTAGAT
CATCAATAAGCATATGTGTGAATTTAATAGATAAGCTTTCTGATAATTTTATTATAGTTTTGATCAAGCCTCAGTTTGAG
GTTAAAAGTTTAAATTTAGATATAAAAAATTTTAATGGTGTTGTGAATGGTGATTATTTGAAGACAATTTTGCAAAGTGT
AATTGAAAAGTTCTATAAAAACAAATTACAAGTTAAAAATATATTAAAGTTAAAAACAAAAGGTAAAAAAGGCAATCAAG
AATTTATGTTTTTAGTTGCTAGGTCAAGTGTTTTAAATATTGTAAGCTCTATGCAATTGCTTAACAATATTGAATTTTAA

Upstream 100 bases:

>100_bases
AATCTAAAGACAGGCCGCGCTTTAAAAATTGAAAGGATTCAGAAATAATTTATTAAACATACTTTGTAAAAGGTATCCAA
AAAAAACACGAGAAGAATTA

Downstream 100 bases:

>100_bases
TATTTGTCTAAAGTCTTTTTATTTAATATTCCTGAAAAGTTTAAGTTTAATTCTTCAAGTATTATTGGATTATTTTCTAT
TGTTAAAATTATTCCAGCAA

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MILILTGNVYVNSHKEKNPKILINKTSKIDLVENACQTFVSRGGYKLLESLKDFEIEVKNKICVDVGSSTGGFTDCLLQC
GANFVYSVDVGINQLSYKLRIDPRVKVLERTNIFDVTEFKIVPNFAVVDVSFRSSISICVNLIDKLSDNFIIVLIKPQFE
VKSLNLDIKNFNGVVNGDYLKTILQSVIEKFYKNKLQVKNILKLKTKGKKGNQEFMFLVARSSVLNIVSSMQLLNNIEF

Sequences:

>Translated_239_residues
MILILTGNVYVNSHKEKNPKILINKTSKIDLVENACQTFVSRGGYKLLESLKDFEIEVKNKICVDVGSSTGGFTDCLLQC
GANFVYSVDVGINQLSYKLRIDPRVKVLERTNIFDVTEFKIVPNFAVVDVSFRSSISICVNLIDKLSDNFIIVLIKPQFE
VKSLNLDIKNFNGVVNGDYLKTILQSVIEKFYKNKLQVKNILKLKTKGKKGNQEFMFLVARSSVLNIVSSMQLLNNIEF
>Mature_239_residues
MILILTGNVYVNSHKEKNPKILINKTSKIDLVENACQTFVSRGGYKLLESLKDFEIEVKNKICVDVGSSTGGFTDCLLQC
GANFVYSVDVGINQLSYKLRIDPRVKVLERTNIFDVTEFKIVPNFAVVDVSFRSSISICVNLIDKLSDNFIIVLIKPQFE
VKSLNLDIKNFNGVVNGDYLKTILQSVIEKFYKNKLQVKNILKLKTKGKKGNQEFMFLVARSSVLNIVSSMQLLNNIEF

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27001; Mature: 27001

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILILTGNVYVNSHKEKNPKILINKTSKIDLVENACQTFVSRGGYKLLESLKDFEIEVKN
CEEEEECCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHCCEEEECC
KICVDVGSSTGGFTDCLLQCGANFVYSVDVGINQLSYKLRIDPRVKVLERTNIFDVTEFK
EEEEEECCCCCCHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCEEEEECCCCEEEEEEE
IVPNFAVVDVSFRSSISICVNLIDKLSDNFIIVLIKPQFEVKSLNLDIKNFNGVVNGDYL
EECCEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCHHH
KTILQSVIEKFYKNKLQVKNILKLKTKGKKGNQEFMFLVARSSVLNIVSSMQLLNNIEF
HHHHHHHHHHHHHCHHHHHHHHHEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MILILTGNVYVNSHKEKNPKILINKTSKIDLVENACQTFVSRGGYKLLESLKDFEIEVKN
CEEEEECCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHCCEEEECC
KICVDVGSSTGGFTDCLLQCGANFVYSVDVGINQLSYKLRIDPRVKVLERTNIFDVTEFK
EEEEEECCCCCCHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCEEEEECCCCEEEEEEE
IVPNFAVVDVSFRSSISICVNLIDKLSDNFIIVLIKPQFEVKSLNLDIKNFNGVVNGDYL
EECCEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCHHH
KTILQSVIEKFYKNKLQVKNILKLKTKGKKGNQEFMFLVARSSVLNIVSSMQLLNNIEF
HHHHHHHHHHHHHCHHHHHHHHHEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]