Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
---|---|
Accession | NC_006155 |
Length | 4,744,671 |
Click here to switch to the map view.
The map label for this gene is rnr
Identifier: 51594784
GI number: 51594784
Start: 516271
End: 518805
Strand: Direct
Name: rnr
Synonym: YPTB0432
Alternate gene names: 51594784
Gene position: 516271-518805 (Clockwise)
Preceding gene: 51594783
Following gene: 51594785
Centisome position: 10.88
GC content: 52.31
Gene sequence:
>2535_bases ATGTCACAAGATCCATTCCTGGAACGAGAAGCAGAGAAATATGAGTCACCAATCCCTAGCCGGGAATTTATTTTGGCTCA TCTCGCGAAGCGCGAGACACCTGCCAGCCGTGAAGAGCTGGCCAATGAACTTAATTTAACCGGTGAAGAGCCTTTAGAGG CGCTACGCCGTCGTTTGCGTGCGATGGAACGTGATGGGCAATTGGTCTTCACCCGTCGTCAGTGCTACGCCTTGCCAGAG CGTCTGGATTTACTGCGCGGTACGGTTATTGGTCACCGTGATGGCTATGGCTTTTTGCGGGTTGAAGGCAGTAAAGATGA TCTGTATCTCTCCGCAGAGCAGATGAAAATGGCGATCCATGGTGATGTCGTCTTGGCACAAGTGGTCGGGGCTGATCGTA AAGGCCGCCGTGAAGCGCGTATCGTGCGTGTATTGGTCCCAAAAACCAGCCAGATCGTGGGTCGCTACTTTACCGATGCA GGTACGGGCTTTGTCGTGCCGGATGACAGTCGTCTTAGCTTTGATATCTTGATCCCAGCAGAGGCGACCTGTGGTGCGCG GATGGGCTTTGTGGTCGTAGTCGAATTGACTCAGCGGCCAACTCGCCGTACTAAAGCGGTTGGTAAGATTGTTGAAGTAC TTGGTGAGAATATGGGCACCAGCATGGCGGTGGATATCGCATTGCGGACCCATGAGATCCCGCACACCTGGCCGCCTCAA GTTGAAAAACAAGTCGCAGATCTGAAAGAACAGGTACCGGAAGAAGCGAAAAAGGGGCGGGTAGATTTGCGCGATCTGCC TCTGGTTACGATTGATGGTGAAGATGCCCGCGACTTCGATGATGCCGTGTATTGCGAGAAGAAACGTGGCGGCGGTTGGC GGTTGTGGGTAGCGATTGCGGATGTCAGTTATTATGTGCGTCCTCAAACCGCATTGGATGACGAAGCCCGGAGCCGTGGT AACTCGGTCTACTTCCCATCGCAAGTGATACCGATGCTGCCGGAAGTGCTATCAAACGGCCTTTGCTCCCTTAATCCACA GGTAGACCGCCTGTGTATGGTGTGCGAGATGACCATCTCTTCGCAGGGCAAACTCTCGTCTTATAAGTTCTACGAAGCGG TAATGAGCTCCCATGCTCGTCTGACCTACACTAAGGTGTGGCGGATTATAGATGGTGAGGAATCGCTGCGTGAGCAATAT AAGCCGCTGGTGCCACATCTGGAAGAGCTGCACGCGATGTATAAAGTGCTGGATCAGGCGCGCGCAGAGCGGGGAGGGAT TGCTTTCGAAACAGAAGAAGCCAAGTTTATCTTTAATGCTGAACGGCGCATTGAACGTATCGAACCCACGGTACGTAATG ATGCCCATAAGCTAATTGAAGAGTGCATGATTCTGGCGAATATCGCGGCGGCGCGTTTTGTGGAAAAACACGAAGAACCG GCGTTGTTCCGAGTGCATGATCGCCCAAGCGATGACCATATTGTGGCATTGCGCAGTGTGTTGAATGAGTTGGGGCTAAC ACTCGGGGGCGGGCTGAAGCCGCAACCAAAAGATTATTCAGTGTTGATGGATGAAATTTCTGATCGCCCCGATCATGAAA TGCTGCAAACCATGTTGCTACGCTCCATGAAACAAGCGGTTTATGATCCAGAAAACCGGGGTCACTTTGGTTTGGCGCTG GCTTCTTATGGCCACTTCACCTCACCTATTCGTCGTTACCCTGATTTGGCGATGCATCGGGCTATTAAGTATCAGTTAGC CAAAGAGCACGGTAATTTAAAAGATCGCTGGACACCTACGGGCGGCTGGCACAGCGATTTCGAAGATATGCTGCAATTGG GCCAACACTGTTCGATGACCGAGCGCCGAGCGGATGAAGCAACCCGCGATGTCGCTGACTGGCTGAAGTGTGACTTCATG CTAGATCAGGTCGGTAATGTCTTCACCGGTATTATTGCCAGTGTGACCGGTTTTGGCTTCTTCGTGCGTCTGGATGACCT CTTTATCGATGGTCTGGTGCATGTCTCCAGCCTGGATAACGATTACTACCGTTACGACAACATTGGTCAGCGTCTGATCG GTGAATCTTCCGGTGTAGTTTATCGGCTGGGTGATACCGTGGAGATTCGAGTCGATGCGGTTCATATGGATGAGCGTAAA ATTGACTTTGCTCTGGTCTCCAGTACCCGCAAGCCACGTGGTGAAGGCAAGACCGCCCGTGATAAGGCGAAAAATAACGG CCAGCGTACATTACGCAGTAATTCTGCAGGTCGTGGCTCTTCATCCGGCTCATCGCGCCGTGATGGTGCGCCAACTGCGG GTGGACAAAAACGCCCACGTCGGGCGAAAAAACCGGTAAACTTCGAGCCGGACAGTGCGTTCCGTCCAGATGCTGCCGCG GCTAAGCCAGACGATAAAGCCTTAGCTGAGAAGAAAGCCAAGGCGAAGGCAAAAAGAGCCTCGGCTAAGACCAAAAAAAT TGCTGCGGCGACCAAAGCCAAGCGAGCAAAGAAAAAAACCACTAGCGATCAGTAA
Upstream 100 bases:
>100_bases GCTTCAAGTCAATGATTCGGGTGATTGAGAGCAGCCAACACACCTGCACTTTGAAAGACGATGGGTATAGCAACCTGCTG CTGACAACGGAGGAACCTCA
Downstream 100 bases:
>100_bases TTAGCGATCAGTAAGTAATGGTGGTGTGCTACTTGCCGGGCGGCTTTTGTCGCCCGCATATAATTTAATTATTGGTGGGT AAGTCATATTGTCTGCCAAC
Product: exoribonuclease R
Products: NA
Alternate protein names: RNase R; Protein vacB [H]
Number of amino acids: Translated: 844; Mature: 843
Protein sequence:
>844_residues MSQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELANELNLTGEEPLEALRRRLRAMERDGQLVFTRRQCYALPE RLDLLRGTVIGHRDGYGFLRVEGSKDDLYLSAEQMKMAIHGDVVLAQVVGADRKGRREARIVRVLVPKTSQIVGRYFTDA GTGFVVPDDSRLSFDILIPAEATCGARMGFVVVVELTQRPTRRTKAVGKIVEVLGENMGTSMAVDIALRTHEIPHTWPPQ VEKQVADLKEQVPEEAKKGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPQTALDDEARSRG NSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTISSQGKLSSYKFYEAVMSSHARLTYTKVWRIIDGEESLREQY KPLVPHLEELHAMYKVLDQARAERGGIAFETEEAKFIFNAERRIERIEPTVRNDAHKLIEECMILANIAAARFVEKHEEP ALFRVHDRPSDDHIVALRSVLNELGLTLGGGLKPQPKDYSVLMDEISDRPDHEMLQTMLLRSMKQAVYDPENRGHFGLAL ASYGHFTSPIRRYPDLAMHRAIKYQLAKEHGNLKDRWTPTGGWHSDFEDMLQLGQHCSMTERRADEATRDVADWLKCDFM LDQVGNVFTGIIASVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRYDNIGQRLIGESSGVVYRLGDTVEIRVDAVHMDERK IDFALVSSTRKPRGEGKTARDKAKNNGQRTLRSNSAGRGSSSGSSRRDGAPTAGGQKRPRRAKKPVNFEPDSAFRPDAAA AKPDDKALAEKKAKAKAKRASAKTKKIAAATKAKRAKKKTTSDQ
Sequences:
>Translated_844_residues MSQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELANELNLTGEEPLEALRRRLRAMERDGQLVFTRRQCYALPE RLDLLRGTVIGHRDGYGFLRVEGSKDDLYLSAEQMKMAIHGDVVLAQVVGADRKGRREARIVRVLVPKTSQIVGRYFTDA GTGFVVPDDSRLSFDILIPAEATCGARMGFVVVVELTQRPTRRTKAVGKIVEVLGENMGTSMAVDIALRTHEIPHTWPPQ VEKQVADLKEQVPEEAKKGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPQTALDDEARSRG NSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTISSQGKLSSYKFYEAVMSSHARLTYTKVWRIIDGEESLREQY KPLVPHLEELHAMYKVLDQARAERGGIAFETEEAKFIFNAERRIERIEPTVRNDAHKLIEECMILANIAAARFVEKHEEP ALFRVHDRPSDDHIVALRSVLNELGLTLGGGLKPQPKDYSVLMDEISDRPDHEMLQTMLLRSMKQAVYDPENRGHFGLAL ASYGHFTSPIRRYPDLAMHRAIKYQLAKEHGNLKDRWTPTGGWHSDFEDMLQLGQHCSMTERRADEATRDVADWLKCDFM LDQVGNVFTGIIASVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRYDNIGQRLIGESSGVVYRLGDTVEIRVDAVHMDERK IDFALVSSTRKPRGEGKTARDKAKNNGQRTLRSNSAGRGSSSGSSRRDGAPTAGGQKRPRRAKKPVNFEPDSAFRPDAAA AKPDDKALAEKKAKAKAKRASAKTKKIAAATKAKRAKKKTTSDQ >Mature_843_residues SQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELANELNLTGEEPLEALRRRLRAMERDGQLVFTRRQCYALPER LDLLRGTVIGHRDGYGFLRVEGSKDDLYLSAEQMKMAIHGDVVLAQVVGADRKGRREARIVRVLVPKTSQIVGRYFTDAG TGFVVPDDSRLSFDILIPAEATCGARMGFVVVVELTQRPTRRTKAVGKIVEVLGENMGTSMAVDIALRTHEIPHTWPPQV EKQVADLKEQVPEEAKKGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPQTALDDEARSRGN SVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTISSQGKLSSYKFYEAVMSSHARLTYTKVWRIIDGEESLREQYK PLVPHLEELHAMYKVLDQARAERGGIAFETEEAKFIFNAERRIERIEPTVRNDAHKLIEECMILANIAAARFVEKHEEPA LFRVHDRPSDDHIVALRSVLNELGLTLGGGLKPQPKDYSVLMDEISDRPDHEMLQTMLLRSMKQAVYDPENRGHFGLALA SYGHFTSPIRRYPDLAMHRAIKYQLAKEHGNLKDRWTPTGGWHSDFEDMLQLGQHCSMTERRADEATRDVADWLKCDFML DQVGNVFTGIIASVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRYDNIGQRLIGESSGVVYRLGDTVEIRVDAVHMDERKI DFALVSSTRKPRGEGKTARDKAKNNGQRTLRSNSAGRGSSSGSSRRDGAPTAGGQKRPRRAKKPVNFEPDSAFRPDAAAA KPDDKALAEKKAKAKAKRASAKTKKIAAATKAKRAKKKTTSDQ
Specific function: 3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs. Required for the expression of virulence genes in enteroinvasive strains of E.coli [H]
COG id: COG0557
COG function: function code K; Exoribonuclease R
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Homo sapiens, GI190014623, Length=403, Percent_Identity=30.7692307692308, Blast_Score=175, Evalue=2e-43, Organism=Homo sapiens, GI190014625, Length=403, Percent_Identity=30.7692307692308, Blast_Score=175, Evalue=2e-43, Organism=Homo sapiens, GI134288890, Length=409, Percent_Identity=30.5623471882641, Blast_Score=160, Evalue=6e-39, Organism=Homo sapiens, GI19115966, Length=578, Percent_Identity=26.2975778546713, Blast_Score=141, Evalue=3e-33, Organism=Homo sapiens, GI219521928, Length=578, Percent_Identity=26.2975778546713, Blast_Score=141, Evalue=3e-33, Organism=Escherichia coli, GI87082383, Length=795, Percent_Identity=78.7421383647799, Blast_Score=1285, Evalue=0.0, Organism=Escherichia coli, GI1787542, Length=650, Percent_Identity=26.3076923076923, Blast_Score=161, Evalue=1e-40, Organism=Caenorhabditis elegans, GI212645896, Length=421, Percent_Identity=31.5914489311164, Blast_Score=185, Evalue=1e-46, Organism=Caenorhabditis elegans, GI17553506, Length=539, Percent_Identity=27.6437847866419, Blast_Score=163, Evalue=3e-40, Organism=Saccharomyces cerevisiae, GI6324552, Length=519, Percent_Identity=27.9383429672447, Blast_Score=160, Evalue=7e-40, Organism=Saccharomyces cerevisiae, GI6323943, Length=357, Percent_Identity=25.7703081232493, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24649634, Length=496, Percent_Identity=29.2338709677419, Blast_Score=182, Evalue=8e-46, Organism=Drosophila melanogaster, GI19922976, Length=375, Percent_Identity=29.6, Blast_Score=140, Evalue=4e-33, Organism=Drosophila melanogaster, GI24654597, Length=375, Percent_Identity=29.6, Blast_Score=140, Evalue=4e-33, Organism=Drosophila melanogaster, GI24654592, Length=375, Percent_Identity=29.6, Blast_Score=140, Evalue=5e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011129 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR022967 - InterPro: IPR013223 - InterPro: IPR001900 - InterPro: IPR022966 - InterPro: IPR004476 - InterPro: IPR011805 - InterPro: IPR013668 [H]
Pfam domain/function: PF08461 HTH_12; PF08206 OB_RNB; PF00773 RNB; PF00575 S1 [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 94925; Mature: 94794
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELANELNLTGEEPLEALRRRLR CCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGYGFLRVEGSKDDLYLSAEQMKMAIH HHCCCCCEEEEHHHHHHCHHHHHHHHHHEEECCCCCEEEEEECCCCCEEEEHHHHHHHHH GDVVLAQVVGADRKGRREARIVRVLVPKTSQIVGRYFTDAGTGFVVPDDSRLSFDILIPA CHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCEEEEEEECC EATCGARMGFVVVVELTQRPTRRTKAVGKIVEVLGENMGTSMAVDIALRTHEIPHTWPPQ CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCHH VEKQVADLKEQVPEEAKKGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA HHHHHHHHHHHCCHHHHCCCCCCCCCCEEEECCCCCCCCCHHHEEECCCCCCEEEEEEEE DVSYYVRPQTALDDEARSRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS CCEEEECCCCCCCHHHHHCCCEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC SQGKLSSYKFYEAVMSSHARLTYTKVWRIIDGEESLREQYKPLVPHLEELHAMYKVLDQA CCCCCHHHHHHHHHHHCCCEEEEEHHHEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHH RAERGGIAFETEEAKFIFNAERRIERIEPTVRNDAHKLIEECMILANIAAARFVEKHEEP HHHHCCCEEECCCCEEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ALFRVHDRPSDDHIVALRSVLNELGLTLGGGLKPQPKDYSVLMDEISDRPDHEMLQTMLL CEEEEECCCCCCHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHH RSMKQAVYDPENRGHFGLALASYGHFTSPIRRYPDLAMHRAIKYQLAKEHGNLKDRWTPT HHHHHHHCCCCCCCCEEEEEHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCC GGWHSDFEDMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFTGIIASVTGFGF CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEE FVRLDDLFIDGLVHVSSLDNDYYRYDNIGQRLIGESSGVVYRLGDTVEIRVDAVHMDERK EEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEEEEEECCCHH IDFALVSSTRKPRGEGKTARDKAKNNGQRTLRSNSAGRGSSSGSSRRDGAPTAGGQKRPR CCHHEECCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH RAKKPVNFEPDSAFRPDAAAAKPDDKALAEKKAKAKAKRASAKTKKIAAATKAKRAKKKT HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TSDQ CCCC >Mature Secondary Structure SQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELANELNLTGEEPLEALRRRLR CCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGYGFLRVEGSKDDLYLSAEQMKMAIH HHCCCCCEEEEHHHHHHCHHHHHHHHHHEEECCCCCEEEEEECCCCCEEEEHHHHHHHHH GDVVLAQVVGADRKGRREARIVRVLVPKTSQIVGRYFTDAGTGFVVPDDSRLSFDILIPA CHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCEEEEEEECC EATCGARMGFVVVVELTQRPTRRTKAVGKIVEVLGENMGTSMAVDIALRTHEIPHTWPPQ CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCHH VEKQVADLKEQVPEEAKKGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA HHHHHHHHHHHCCHHHHCCCCCCCCCCEEEECCCCCCCCCHHHEEECCCCCCEEEEEEEE DVSYYVRPQTALDDEARSRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS CCEEEECCCCCCCHHHHHCCCEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC SQGKLSSYKFYEAVMSSHARLTYTKVWRIIDGEESLREQYKPLVPHLEELHAMYKVLDQA CCCCCHHHHHHHHHHHCCCEEEEEHHHEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHH RAERGGIAFETEEAKFIFNAERRIERIEPTVRNDAHKLIEECMILANIAAARFVEKHEEP HHHHCCCEEECCCCEEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ALFRVHDRPSDDHIVALRSVLNELGLTLGGGLKPQPKDYSVLMDEISDRPDHEMLQTMLL CEEEEECCCCCCHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHH RSMKQAVYDPENRGHFGLALASYGHFTSPIRRYPDLAMHRAIKYQLAKEHGNLKDRWTPT HHHHHHHCCCCCCCCEEEEEHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCC GGWHSDFEDMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFTGIIASVTGFGF CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEE FVRLDDLFIDGLVHVSSLDNDYYRYDNIGQRLIGESSGVVYRLGDTVEIRVDAVHMDERK EEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEEEEEECCCHH IDFALVSSTRKPRGEGKTARDKAKNNGQRTLRSNSAGRGSSSGSSRRDGAPTAGGQKRPR CCHHEECCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH RAKKPVNFEPDSAFRPDAAAAKPDDKALAEKKAKAKAKRASAKTKKIAAATKAKRAKKKT HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TSDQ CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503; 3058695; 1400189; 9603904 [H]