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The map label for this gene is xseB

Identifier: 50842054

GI number: 50842054

Start: 628420

End: 628656

Strand: Reverse

Name: xseB

Synonym: PPA0568

Alternate gene names: 50842054

Gene position: 628656-628420 (Counterclockwise)

Preceding gene: 50842055

Following gene: 50842050

Centisome position: 24.55

GC content: 61.6

Gene sequence:

>237_bases
ATGACCGACACTACCCCGAACTCAGCTCCCGAGGAACCGGAAATCACCTACGAGGCTGCACGCGACGAACTAGTCGAAAT
CGTCACCCGGCTCGAATCCGGTGGGATCTCCCTAGCCGAAACCATGACTTTGTGGGAGCGCGGCGAGAAACTAGCTGACA
TCTGCCAGTCATGGCTCAACGGGGCGCGGGCCCGCATCGAAGCGGCACGATCTGACGCCGAAACCGCGCAGCCCTGA

Upstream 100 bases:

>100_bases
GCGCGAACCTATTGGTCTACCTGTCTGACGGTACCCTCAGCGTCACCGTCGATTCTCTCGACCGCCGCACCCCAAACCGT
CCCACCTTCCAGGAGGACTC

Downstream 100 bases:

>100_bases
CGCCGAGCGGCCCACATGCCGAAAGGTCAAGACGTCGTCAGCATCCCCGCAAAGTCGGTGAGAACTCGATAATCAGTGTC
CGCAACGACCACCGCCGTCG

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 78; Mature: 77

Protein sequence:

>78_residues
MTDTTPNSAPEEPEITYEAARDELVEIVTRLESGGISLAETMTLWERGEKLADICQSWLNGARARIEAARSDAETAQP

Sequences:

>Translated_78_residues
MTDTTPNSAPEEPEITYEAARDELVEIVTRLESGGISLAETMTLWERGEKLADICQSWLNGARARIEAARSDAETAQP
>Mature_77_residues
TDTTPNSAPEEPEITYEAARDELVEIVTRLESGGISLAETMTLWERGEKLADICQSWLNGARARIEAARSDAETAQP

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_PROAC (Q6AA93)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_055281.1
- ProteinModelPortal:   Q6AA93
- SMR:   Q6AA93
- GeneID:   2931732
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA0568
- NMPDR:   fig|267747.1.peg.558
- HOGENOM:   HBG728416
- OMA:   EETKDER
- ProtClustDB:   PRK00977
- BioCyc:   PACN267747:PPA0568-MONOMER
- BRENDA:   3.1.11.6
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8564; Mature: 8433

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTTPNSAPEEPEITYEAARDELVEIVTRLESGGISLAETMTLWERGEKLADICQSWLN
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
GARARIEAARSDAETAQP
HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TDTTPNSAPEEPEITYEAARDELVEIVTRLESGGISLAETMTLWERGEKLADICQSWLN
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
GARARIEAARSDAETAQP
HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA