Click here to switch to the map view.

The map label for this gene is yrvN [H]

Identifier: 50365221

GI number: 50365221

Start: 470877

End: 472109

Strand: Reverse

Name: yrvN [H]

Synonym: Mfl403

Alternate gene names: 50365221

Gene position: 472109-470877 (Counterclockwise)

Preceding gene: 50365222

Following gene: 50365220

Centisome position: 59.52

GC content: 27.25

Gene sequence:

>1233_bases
ATGAATACACCATTAGCATATTTATTAAGACCAAAGACAACATCTGAAATTATAGGTCAAGAGAATCTATTAAAAGAAGA
TGGTTTAATTAAAAAAATGATAAGTAATAATTTTTGTAGATCATTAATCTTTTATGGGCCAAGTGGGGTTGGTAAAACTT
CATTTGCTATAGCATTAGCTAATGATCTTAATATTGAATATGATTTGTTTAATGCAAGTTATGATAAAAAAGAAAATCTA
ACTAAAATTATTGATAAAGCTATAAATAAAGAAAGATTTATTTTAATAATTGATGAAATACATAGATTAAATCGTGACAA
GCAAGATATATTATTGAACTTTATGGAGAGTGGGAACGTATATTTATTTGCAACAACTACAGAGAATCCATTTTTTACAA
TTAACCCCGCTATTAGAAGTAGGGCCACAATATTAGAATTAAAAAGAGTAAGTCATGATGAATCTTTTGCTTTTGTAAAC
AAATTAATTAAAGATAAAAAAGTAGATATTAATATTAAACCTGAATCACTTAAATACTTATGTGAATTAAATAGTGGAGA
TATTAGAAGTCTTTTAAATAATATTGAACTGTTTCATAATTTATATAAAGGTGAAGAAATTACAATTGATTTAATTTCTT
CAATTATTTCTCAAGGAAAAAATCCAAGTGGAGCTACTGGAGATGATTTTCATGATTTAAAATCAGCATTGCAAAAATCA
GTTAGAGGTAGTGATGTTGATGCTAGCTTACATTATTTTAGTAGATTATTATCTATTGGAGATTATGAAACTTTAATGCG
AAGAATGGTTATTATGGCATATGAAGATATAGGGCTAGCAAACCCAAGTTTACCACCAAGAGTTATGCAAGCGTGTGATG
CATTTAGACAAATTGGAATGCCTGAAGGAATTATTCCATTAGGTTTAGTTATTATAGAAATGGCTTTAAGTCAAAAATCA
AACTCTGCTTTAATGGCAAGTGGCAAAGCTTTTGAAGATGTTAAAAATGGAATGGCATATGAAGTGCCATCTCATTTAAA
AGACAATCATTATAAATCAGCTGTTAAATTAAATAGAGGTGTTAACTATTTATACCCACATGTTGAAGAAAAAGGTTGAG
TTGCTCAACAATATTTACCTAATGAGATAAAAAATATTAAATATTTCAAACCTAAAACAAACTCTGCGTATGAAAGAAAA
CTTTGATCTTTATATGAGGAGATGAAAAAATAA

Upstream 100 bases:

>100_bases
TGCTGAAAAATATGAAGAGGTATTTGCAATAGTTTTTAAAACAAAATAAGAGTAAAATAATAACTAGTAAAAACTAGTTA
TTTTTTATTAAGGAGGAATT

Downstream 100 bases:

>100_bases
TACTAAAAGAGGAGTTATTATAGTGAAAAAGATACTTATTGTATTAACTAATACAAACCAATATGGTAATTACAAGGAAA
AAACTGGATTGTGGCTTGGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MNTPLAYLLRPKTTSEIIGQENLLKEDGLIKKMISNNFCRSLIFYGPSGVGKTSFAIALANDLNIEYDLFNASYDKKENL
TKIIDKAINKERFILIIDEIHRLNRDKQDILLNFMESGNVYLFATTTENPFFTINPAIRSRATILELKRVSHDESFAFVN
KLIKDKKVDINIKPESLKYLCELNSGDIRSLLNNIELFHNLYKGEEITIDLISSIISQGKNPSGATGDDFHDLKSALQKS
VRGSDVDASLHYFSRLLSIGDYETLMRRMVIMAYEDIGLANPSLPPRVMQACDAFRQIGMPEGIIPLGLVIIEMALSQKS
NSALMASGKAFEDVKNGMAYEVPSHLKDNHYKSAVKLNRGVNYLYPHVEEKGWVAQQYLPNEIKNIKYFKPKTNSAYERK
LWSLYEEMKK

Sequences:

>Translated_410_residues
MNTPLAYLLRPKTTSEIIGQENLLKEDGLIKKMISNNFCRSLIFYGPSGVGKTSFAIALANDLNIEYDLFNASYDKKENL
TKIIDKAINKERFILIIDEIHRLNRDKQDILLNFMESGNVYLFATTTENPFFTINPAIRSRATILELKRVSHDESFAFVN
KLIKDKKVDINIKPESLKYLCELNSGDIRSLLNNIELFHNLYKGEEITIDLISSIISQGKNPSGATGDDFHDLKSALQKS
VRGSDVDASLHYFSRLLSIGDYETLMRRMVIMAYEDIGLANPSLPPRVMQACDAFRQIGMPEGIIPLGLVIIEMALSQKS
NSALMASGKAFEDVKNGMAYEVPSHLKDNHYKSAVKLNRGVNYLYPHVEEKG*VAQQYLPNEIKNIKYFKPKTNSAYERK
L*SLYEEMKK
>Mature_410_residues
MNTPLAYLLRPKTTSEIIGQENLLKEDGLIKKMISNNFCRSLIFYGPSGVGKTSFAIALANDLNIEYDLFNASYDKKENL
TKIIDKAINKERFILIIDEIHRLNRDKQDILLNFMESGNVYLFATTTENPFFTINPAIRSRATILELKRVSHDESFAFVN
KLIKDKKVDINIKPESLKYLCELNSGDIRSLLNNIELFHNLYKGEEITIDLISSIISQGKNPSGATGDDFHDLKSALQKS
VRGSDVDASLHYFSRLLSIGDYETLMRRMVIMAYEDIGLANPSLPPRVMQACDAFRQIGMPEGIIPLGLVIIEMALSQKS
NSALMASGKAFEDVKNGMAYEVPSHLKDNHYKSAVKLNRGVNYLYPHVEEKG*VAQQYLPNEIKNIKYFKPKTNSAYERK
L*SLYEEMKK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=438, Percent_Identity=28.9954337899543, Blast_Score=171, Evalue=9e-43,
Organism=Homo sapiens, GI18426904, Length=422, Percent_Identity=29.1469194312796, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI6677723, Length=208, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1787119, Length=415, Percent_Identity=31.566265060241, Blast_Score=212, Evalue=4e-56,
Organism=Saccharomyces cerevisiae, GI6324111, Length=422, Percent_Identity=33.4123222748815, Blast_Score=186, Evalue=6e-48,
Organism=Saccharomyces cerevisiae, GI6324039, Length=209, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 46220; Mature: 46220

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPLAYLLRPKTTSEIIGQENLLKEDGLIKKMISNNFCRSLIFYGPSGVGKTSFAIALA
CCCCCEEEECCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
NDLNIEYDLFNASYDKKENLTKIIDKAINKERFILIIDEIHRLNRDKQDILLNFMESGNV
CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCHHHHHHHHHCCCCE
YLFATTTENPFFTINPAIRSRATILELKRVSHDESFAFVNKLIKDKKVDINIKPESLKYL
EEEEEECCCCEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECHHHHHHH
CELNSGDIRSLLNNIELFHNLYKGEEITIDLISSIISQGKNPSGATGDDFHDLKSALQKS
HCCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
VRGSDVDASLHYFSRLLSIGDYETLMRRMVIMAYEDIGLANPSLPPRVMQACDAFRQIGM
HCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
PEGIIPLGLVIIEMALSQKSNSALMASGKAFEDVKNGMAYEVPSHLKDNHYKSAVKLNRG
CCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCEECCCHHHCCCHHHHHHHHHCC
VNYLYPHVEEKGVAQQYLPNEIKNIKYFKPKTNSAYERKLSLYEEMKK
CCCCCCCCHHCCCHHHHCCHHHCCCEEECCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNTPLAYLLRPKTTSEIIGQENLLKEDGLIKKMISNNFCRSLIFYGPSGVGKTSFAIALA
CCCCCEEEECCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
NDLNIEYDLFNASYDKKENLTKIIDKAINKERFILIIDEIHRLNRDKQDILLNFMESGNV
CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCHHHHHHHHHCCCCE
YLFATTTENPFFTINPAIRSRATILELKRVSHDESFAFVNKLIKDKKVDINIKPESLKYL
EEEEEECCCCEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECHHHHHHH
CELNSGDIRSLLNNIELFHNLYKGEEITIDLISSIISQGKNPSGATGDDFHDLKSALQKS
HCCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
VRGSDVDASLHYFSRLLSIGDYETLMRRMVIMAYEDIGLANPSLPPRVMQACDAFRQIGM
HCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
PEGIIPLGLVIIEMALSQKSNSALMASGKAFEDVKNGMAYEVPSHLKDNHYKSAVKLNRG
CCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCEECCCHHHCCCHHHHHHHHHCC
VNYLYPHVEEKGVAQQYLPNEIKNIKYFKPKTNSAYERKLSLYEEMKK
CCCCCCCCHHCCCHHHHCCHHHCCCEEECCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]