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The map label for this gene is jag [H]

Identifier: 49188322

GI number: 49188322

Start: 5226515

End: 5227132

Strand: Reverse

Name: jag [H]

Synonym: BAS5338

Alternate gene names: 49188322

Gene position: 5227132-5226515 (Counterclockwise)

Preceding gene: 49188323

Following gene: 49188321

Centisome position: 99.97

GC content: 35.6

Gene sequence:

>618_bases
GTGAGTATAATTACTGCTAAAGGACAAACAGTCGAGCTGGCAGTACAGGATGCTTTAAGGCAACTAAATGTTTCAAAAGA
CCGAGTAGATATAAGTATTATCGATGAGGGTAAGAGAGGGTTCTTAGGTTTATTTGGGAACCGACCTGCAGTAGTAGAAG
TTGTATTGAAGAAAGATCCAATTCAAGAATGTGAAGAATATTTAAAAAATGTTATTCACGATATGGGTGTGGAAGCTGAG
ATTAGTAAAATTGTAAAGGGACGCGAAGTTGAATTTACAATTTACGGCGAAAATGTAGGTGTTTTGATTGGAAAAAGAGG
AAACACCTTGAATTCTTTACAGTATTTAACAAAACTTGTAGCGAATCGTAATACGAAGCAGTACATCGGTATCACATTAG
ATGCTGAAAATTATCGTAGTAAAAGAAAAGCTACGTTAGAAGCACTTTCTTATCGATTAGCCAAACAAGTAGTACGTACG
AAAAAAAGAGTTGTGTTGGAGCCTATGCCATCTTTTGAACGAAAGATTATCCACCAAGCATTGTCTAATCATCAAAATAT
CATTACAACTTCTGAAGGAAAAGAACCACATCGACATGTTGTAATATCTTCCAAGTGA

Upstream 100 bases:

>100_bases
TATCACTTTACTGGGTTGTTGGTAATATCTTTGGTATCGCTCAAATGTACTTGATCAAAGGGCCGGAAATTAAGGCTAGT
AAGGCAGGAGGATCAAGCAA

Downstream 100 bases:

>100_bases
CCGGTTACTCAATTGAGTGCCGGTTTTTTTGAGGGGAAAATAGGTGTGGATAACTAAAAAACACTAAACTTATCCACTGT
GAATAAGTTTAGTGTTTTTT

Product: jag protein

Products: NA

Alternate protein names: SpoIIIJ-associated protein [H]

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSIITAKGQTVELAVQDALRQLNVSKDRVDISIIDEGKRGFLGLFGNRPAVVEVVLKKDPIQECEEYLKNVIHDMGVEAE
ISKIVKGREVEFTIYGENVGVLIGKRGNTLNSLQYLTKLVANRNTKQYIGITLDAENYRSKRKATLEALSYRLAKQVVRT
KKRVVLEPMPSFERKIIHQALSNHQNIITTSEGKEPHRHVVISSK

Sequences:

>Translated_205_residues
MSIITAKGQTVELAVQDALRQLNVSKDRVDISIIDEGKRGFLGLFGNRPAVVEVVLKKDPIQECEEYLKNVIHDMGVEAE
ISKIVKGREVEFTIYGENVGVLIGKRGNTLNSLQYLTKLVANRNTKQYIGITLDAENYRSKRKATLEALSYRLAKQVVRT
KKRVVLEPMPSFERKIIHQALSNHQNIITTSEGKEPHRHVVISSK
>Mature_204_residues
SIITAKGQTVELAVQDALRQLNVSKDRVDISIIDEGKRGFLGLFGNRPAVVEVVLKKDPIQECEEYLKNVIHDMGVEAEI
SKIVKGREVEFTIYGENVGVLIGKRGNTLNSLQYLTKLVANRNTKQYIGITLDAENYRSKRKATLEALSYRLAKQVVRTK
KRVVLEPMPSFERKIIHQALSNHQNIITTSEGKEPHRHVVISSK

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 23121; Mature: 22990

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIITAKGQTVELAVQDALRQLNVSKDRVDISIIDEGKRGFLGLFGNRPAVVEVVLKKDP
CCEEECCCCEEEHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEEEECCCC
IQECEEYLKNVIHDMGVEAEISKIVKGREVEFTIYGENVGVLIGKRGNTLNSLQYLTKLV
HHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHHH
ANRNTKQYIGITLDAENYRSKRKATLEALSYRLAKQVVRTKKRVVLEPMPSFERKIIHQA
HCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHH
LSNHQNIITTSEGKEPHRHVVISSK
HCCCCCEEECCCCCCCCEEEEEECC
>Mature Secondary Structure 
SIITAKGQTVELAVQDALRQLNVSKDRVDISIIDEGKRGFLGLFGNRPAVVEVVLKKDP
CEEECCCCEEEHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEEEECCCC
IQECEEYLKNVIHDMGVEAEISKIVKGREVEFTIYGENVGVLIGKRGNTLNSLQYLTKLV
HHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHHH
ANRNTKQYIGITLDAENYRSKRKATLEALSYRLAKQVVRTKKRVVLEPMPSFERKIIHQA
HCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHH
LSNHQNIITTSEGKEPHRHVVISSK
HCCCCCEEECCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1487728; 1552862; 7584024; 9384377 [H]