Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is prfA [H]
Identifier: 49188164
GI number: 49188164
Start: 5057771
End: 5058847
Strand: Reverse
Name: prfA [H]
Synonym: BAS5178
Alternate gene names: 49188164
Gene position: 5058847-5057771 (Counterclockwise)
Preceding gene: 49188165
Following gene: 49188163
Centisome position: 96.75
GC content: 40.02
Gene sequence:
>1077_bases GTGAATGATGTGTTAGATCGTTTGCAAGCTGTAGAAAATCGTTATGAGAAGTTAAATGAATTGCTAAGCGACCCAGCAAT TATTAGTGATTCAAATAAGCTTCGTGAATATTCAAAGGAACAGTCTGATATACAGGAAACGGTAGAGGTGTATCGTGAGT ATAAGGATGTTCGTGAGCAATTAAAAGATGCGAAAGCAATGTTAGAAGATAAGTTAGACGCAGAAATGCGTGAAATGGTA AAAGAAGAGGTTTCTGAGCTAGAATCACAAGAAAAAACATTATCAGAGCGTCTGAAAATTTTACTTGTACCAAAAGATCC TAACGATGATAAGAACGTTATCGTTGAGGTTCGTGGAGCTGCCGGTGGTGACGAGGCTGCTTTATTTGCTGGTGATTTAT ACCGTATGTATAGCCGTTACGCTGAGGTACAAGGTTGGAAAACGGAGATTATCGAGGCTAGCTATACAGAGTTAGGTGGA TATAAAGAGATTATCTTTATGATTAACGGTAAAGGTGCTTTCGCGAAGTTGAAATTTGAGAATGGCGCTCACCGTGTACA ACGTGTTCCTGAAACGGAATCTGGTGGACGTATTCATACATCTACAGCAACTGTAGCTGTATTACCAGAGGCAGAAGAAG TAGAAATTGATATTCATGAGAAAGATGTTCGTGTTGATACATTCGCTTCTAGTGGACCTGGTGGACAGAGCGTTAATACA ACGATGTCAGCGGTACGTTTAACGCATTTACCGACTGGTGTAGTTGTATCGTGTCAGGATGAGAAATCACAAATTAAGAA TAAAGAAAAAGCGATGAAAGTATTACGCGCACGTGTTTATGATAAGTTTAGACAAGAAGCACAAGCTGAGTATGATCAAA ACCGTAAACAAGCTGTTGGTACGGGTGATCGTTCAGAGCGTATTCGTACGTATAACTTCCCGCAAAACCGTGTTACAGAC CATCGAATCGGTTTAACGATTCAAAAGCTAGATCAAATCTTACAAGGTAAGTTAGATGATTTCATCAATGCCTTAGTGAT GGAAGATCAGGCTCAAAGGATGGAGGCAGCTGAGTAA
Upstream 100 bases:
>100_bases GCTGGTCAGAGCTGAACGAGCCACCGCCACTTTTAAATATAATTTGCGTTTTTTTGAGTAAGTACCATATACTATTTGTA TTAGATACTAGGATGTAGAG
Downstream 100 bases:
>100_bases TGCGTGTCTATGAAGCCCTGAAATGGGCTTCTTCTTTTTTACAGGAGAATGGGCGAGATGAAAATGCGGGAGAAATTGTC CTTTGTCATGTATTAAAGAC
Product: peptide chain release factor 1
Products: NA
Alternate protein names: RF-1 [H]
Number of amino acids: Translated: 358; Mature: 358
Protein sequence:
>358_residues MNDVLDRLQAVENRYEKLNELLSDPAIISDSNKLREYSKEQSDIQETVEVYREYKDVREQLKDAKAMLEDKLDAEMREMV KEEVSELESQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGG YKEIIFMINGKGAFAKLKFENGAHRVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNT TMSAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDRSERIRTYNFPQNRVTD HRIGLTIQKLDQILQGKLDDFINALVMEDQAQRMEAAE
Sequences:
>Translated_358_residues MNDVLDRLQAVENRYEKLNELLSDPAIISDSNKLREYSKEQSDIQETVEVYREYKDVREQLKDAKAMLEDKLDAEMREMV KEEVSELESQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGG YKEIIFMINGKGAFAKLKFENGAHRVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNT TMSAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDRSERIRTYNFPQNRVTD HRIGLTIQKLDQILQGKLDDFINALVMEDQAQRMEAAE >Mature_358_residues MNDVLDRLQAVENRYEKLNELLSDPAIISDSNKLREYSKEQSDIQETVEVYREYKDVREQLKDAKAMLEDKLDAEMREMV KEEVSELESQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGG YKEIIFMINGKGAFAKLKFENGAHRVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNT TMSAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDRSERIRTYNFPQNRVTD HRIGLTIQKLDQILQGKLDDFINALVMEDQAQRMEAAE
Specific function: Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA [H]
COG id: COG0216
COG function: function code J; Protein chain release factor A
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic/mitochondrial release factor family [H]
Homologues:
Organism=Homo sapiens, GI166795303, Length=288, Percent_Identity=45.1388888888889, Blast_Score=265, Evalue=7e-71, Organism=Homo sapiens, GI34577120, Length=342, Percent_Identity=37.1345029239766, Blast_Score=229, Evalue=3e-60, Organism=Homo sapiens, GI166795305, Length=207, Percent_Identity=40.5797101449275, Blast_Score=171, Evalue=1e-42, Organism=Escherichia coli, GI1787462, Length=357, Percent_Identity=51.2605042016807, Blast_Score=365, Evalue=1e-102, Organism=Escherichia coli, GI2367172, Length=338, Percent_Identity=36.094674556213, Blast_Score=209, Evalue=2e-55, Organism=Caenorhabditis elegans, GI17542784, Length=281, Percent_Identity=38.7900355871886, Blast_Score=191, Evalue=7e-49, Organism=Saccharomyces cerevisiae, GI6321295, Length=334, Percent_Identity=43.4131736526946, Blast_Score=243, Evalue=4e-65, Organism=Drosophila melanogaster, GI19921226, Length=295, Percent_Identity=42.7118644067797, Blast_Score=235, Evalue=4e-62,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005139 - InterPro: IPR000352 - InterPro: IPR004373 [H]
Pfam domain/function: PF03462 PCRF; PF00472 RF-1 [H]
EC number: NA
Molecular weight: Translated: 40685; Mature: 40685
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: PS00745 RF_PROK_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDVLDRLQAVENRYEKLNELLSDPAIISDSNKLREYSKEQSDIQETVEVYREYKDVREQ CCHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKDAKAMLEDKLDAEMREMVKEEVSELESQEKTLSERLKILLVPKDPNDDKNVIVEVRGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECC AGGDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFE CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEC NGAHRVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNT CCHHHHHCCCCCCCCCEEEECCEEEEECCCCCEEEEEEECCCCEEEECCCCCCCCCCHHH TMSAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVG HHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC TGDRSERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQRMEAAE CCCCCCCCEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNDVLDRLQAVENRYEKLNELLSDPAIISDSNKLREYSKEQSDIQETVEVYREYKDVREQ CCHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKDAKAMLEDKLDAEMREMVKEEVSELESQEKTLSERLKILLVPKDPNDDKNVIVEVRGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECC AGGDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFE CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEC NGAHRVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNT CCHHHHHCCCCCCCCCEEEECCEEEEECCCCCEEEEEEECCCCEEEECCCCCCCCCCHHH TMSAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVG HHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC TGDRSERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQRMEAAE CCCCCCCCEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12721629 [H]