Click here to switch to the map view.

The map label for this gene is ytbD [H]

Identifier: 49187920

GI number: 49187920

Start: 4814493

End: 4815707

Strand: Reverse

Name: ytbD [H]

Synonym: BAS4932

Alternate gene names: 49187920

Gene position: 4815707-4814493 (Counterclockwise)

Preceding gene: 49187924

Following gene: 49187919

Centisome position: 92.1

GC content: 37.86

Gene sequence:

>1215_bases
TTGAGTTCATATACAGTACCATCTTCGGAAGTTCAGACGAATCGACGAAGTATGTTTGCTTTATTAGCACTAGCAATTAG
TGCATTTGGAATTGGGACGACCGAGTTTATTAGTGTCGGTTTATTACCATCTATTTCAAAAGATTTAAATGTTTCGGTTA
CAACAGCTGGTTTAACTGTTTCCCTATATGCATTAGGTGCGGCAGTAGGAGCTCCTGTTTTAACAGCGTTAACGGCTAGT
ATGTCGAGAAAGACATTATTAATGTGGATTATGGTTATTTTCATTATTGGTAATGGGATCGCGGCAGTAGCAACAAGTTT
CACTATATTAATTATCGCAAGGATTGTATCTGCGTTTGCACATGGTGTGTTTATGTCGATAGGATCTACAATTGCGGCCG
CAATCGTCCCAGAGAATAAACGTGCTAGCGCCATTGCGATTATGTTTACTGGATTAACAGTTGCGACTATTACAGGTGTG
CCAATTGGAACGTTTATCGGTCAACAATTTGGCTGGAGAGCGTCATTTATGGCGATTGTCGTAATTGGAATTATTGCTTT
TATCGCAAACAGCATACTAGTCCCATCTAATTTAAAAAATGGTGTACCTGTATCGTTTCGTGATCAATTTAAATTAATTA
AAAATGGAAGACTATTACTTGTCTTCATTATTACTGCACTTGGATATGGCGGTACATTCGTAACATTTACGTATTTATCA
CCACTATTACAAGAAGTAACAGGATTTGAAGCAAGTACGGTTACGATCATTTTATTAGTGTATGGAATTGCCATTGCGAT
AGGGAATATGGTTGGCGGAAAATTATCGAATCATAATCCGATTCGAGCGCTATTTTACATGTTCTTAATTCAAGCGATTA
TATTATTTGTTTTAACATTTACAGCGCCATTTAAGGTAGCTGGATTAATCACAATTATTTTCATGGGACTATTCGCATTT
ATGAATGTTCCGGGGCTACAAGTATATGTAGTTATATTGGCAGAGCGCTTTGTTCCGAGTGCGGTGGATGTTGCTTCAGC
AATTAATATTGCCGCATTTAACGGAGGAATCGCTTTAGGTTCTTATATAGGTGGCCTTGTAACGAATTCGTTAGGATTAA
TCCATACTGCTTGGGTAGGCGGCCTTATGGTAGTAGCCGCTGTTATTTTAACAGCGTGGAGCATGACATTAGAAAAAAGA
GATCAAGTAAAATAA

Upstream 100 bases:

>100_bases
ATAATAGCATTTGTAGAGATTAAATATATTTTTTAGAAGATAAAGAGGCCTTTTTATGGCACTATTATGATTGGATTTCT
TGTAATAAGGAGGAATTCAA

Downstream 100 bases:

>100_bases
AAGGAGAGAAAATAAAATGAAAAACTTACAAAGTAAAGCAGTATTAAATAACGGTGTAGAAATGCCTTGGTTCGGTTTAG
GTGTATTTAAAGTAGAAGAA

Product: major facilitator family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MSSYTVPSSEVQTNRRSMFALLALAISAFGIGTTEFISVGLLPSISKDLNVSVTTAGLTVSLYALGAAVGAPVLTALTAS
MSRKTLLMWIMVIFIIGNGIAAVATSFTILIIARIVSAFAHGVFMSIGSTIAAAIVPENKRASAIAIMFTGLTVATITGV
PIGTFIGQQFGWRASFMAIVVIGIIAFIANSILVPSNLKNGVPVSFRDQFKLIKNGRLLLVFIITALGYGGTFVTFTYLS
PLLQEVTGFEASTVTIILLVYGIAIAIGNMVGGKLSNHNPIRALFYMFLIQAIILFVLTFTAPFKVAGLITIIFMGLFAF
MNVPGLQVYVVILAERFVPSAVDVASAINIAAFNGGIALGSYIGGLVTNSLGLIHTAWVGGLMVVAAVILTAWSMTLEKR
DQVK

Sequences:

>Translated_404_residues
MSSYTVPSSEVQTNRRSMFALLALAISAFGIGTTEFISVGLLPSISKDLNVSVTTAGLTVSLYALGAAVGAPVLTALTAS
MSRKTLLMWIMVIFIIGNGIAAVATSFTILIIARIVSAFAHGVFMSIGSTIAAAIVPENKRASAIAIMFTGLTVATITGV
PIGTFIGQQFGWRASFMAIVVIGIIAFIANSILVPSNLKNGVPVSFRDQFKLIKNGRLLLVFIITALGYGGTFVTFTYLS
PLLQEVTGFEASTVTIILLVYGIAIAIGNMVGGKLSNHNPIRALFYMFLIQAIILFVLTFTAPFKVAGLITIIFMGLFAF
MNVPGLQVYVVILAERFVPSAVDVASAINIAAFNGGIALGSYIGGLVTNSLGLIHTAWVGGLMVVAAVILTAWSMTLEKR
DQVK
>Mature_403_residues
SSYTVPSSEVQTNRRSMFALLALAISAFGIGTTEFISVGLLPSISKDLNVSVTTAGLTVSLYALGAAVGAPVLTALTASM
SRKTLLMWIMVIFIIGNGIAAVATSFTILIIARIVSAFAHGVFMSIGSTIAAAIVPENKRASAIAIMFTGLTVATITGVP
IGTFIGQQFGWRASFMAIVVIGIIAFIANSILVPSNLKNGVPVSFRDQFKLIKNGRLLLVFIITALGYGGTFVTFTYLSP
LLQEVTGFEASTVTIILLVYGIAIAIGNMVGGKLSNHNPIRALFYMFLIQAIILFVLTFTAPFKVAGLITIIFMGLFAFM
NVPGLQVYVVILAERFVPSAVDVASAINIAAFNGGIALGSYIGGLVTNSLGLIHTAWVGGLMVVAAVILTAWSMTLEKRD
QVK

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=335, Percent_Identity=37.6119402985075, Blast_Score=225, Evalue=5e-60,
Organism=Escherichia coli, GI1786595, Length=359, Percent_Identity=31.7548746518106, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1787808, Length=398, Percent_Identity=30.1507537688442, Blast_Score=148, Evalue=7e-37,
Organism=Escherichia coli, GI145693198, Length=366, Percent_Identity=26.5027322404372, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI87082404, Length=290, Percent_Identity=21.0344827586207, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42549; Mature: 42418

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS00589 PTS_HPR_SER ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSYTVPSSEVQTNRRSMFALLALAISAFGIGTTEFISVGLLPSISKDLNVSVTTAGLTV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEEEECCHHH
SLYALGAAVGAPVLTALTASMSRKTLLMWIMVIFIIGNGIAAVATSFTILIIARIVSAFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HGVFMSIGSTIAAAIVPENKRASAIAIMFTGLTVATITGVPIGTFIGQQFGWRASFMAIV
HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHCCCCCHHHHHHHHCCHHHHHHHHH
VIGIIAFIANSILVPSNLKNGVPVSFRDQFKLIKNGRLLLVFIITALGYGGTFVTFTYLS
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHH
PLLQEVTGFEASTVTIILLVYGIAIAIGNMVGGKLSNHNPIRALFYMFLIQAIILFVLTF
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TAPFKVAGLITIIFMGLFAFMNVPGLQVYVVILAERFVPSAVDVASAINIAAFNGGIALG
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCHHHH
SYIGGLVTNSLGLIHTAWVGGLMVVAAVILTAWSMTLEKRDQVK
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSYTVPSSEVQTNRRSMFALLALAISAFGIGTTEFISVGLLPSISKDLNVSVTTAGLTV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEEEECCHHH
SLYALGAAVGAPVLTALTASMSRKTLLMWIMVIFIIGNGIAAVATSFTILIIARIVSAFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
HGVFMSIGSTIAAAIVPENKRASAIAIMFTGLTVATITGVPIGTFIGQQFGWRASFMAIV
HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHCCCCCHHHHHHHHCCHHHHHHHHH
VIGIIAFIANSILVPSNLKNGVPVSFRDQFKLIKNGRLLLVFIITALGYGGTFVTFTYLS
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHH
PLLQEVTGFEASTVTIILLVYGIAIAIGNMVGGKLSNHNPIRALFYMFLIQAIILFVLTF
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TAPFKVAGLITIIFMGLFAFMNVPGLQVYVVILAERFVPSAVDVASAINIAAFNGGIALG
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCHHHH
SYIGGLVTNSLGLIHTAWVGGLMVVAAVILTAWSMTLEKRDQVK
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]