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The map label for this gene is scpB

Identifier: 49186965

GI number: 49186965

Start: 3912492

End: 3913064

Strand: Reverse

Name: scpB

Synonym: BAS3967

Alternate gene names: 49186965

Gene position: 3913064-3912492 (Counterclockwise)

Preceding gene: 49186966

Following gene: 49186964

Centisome position: 74.84

GC content: 36.13

Gene sequence:

>573_bases
ATGGATAGAACAGAACAAAAATCAATTATTGAAGGGCTTTTATTTGTTTCTGGTGATGAAGGGATTTATCCTGAACAAAT
AGCAAAAGTCCTTGAAATTGAAGGAAACGAAGTAATCGATATTTTAGAAGAAATGCAAAAAGAATGTGAAGGTGCACACC
GCGGTTTGCAAATTGTACAGTATGCAAAAGTATATCGTTTTGCTACAAAGAAAGAACATGCGTCTTACTATCAAAAACTA
ATAGAGATCCCAACAGCTGCTTCACTCTCTCAGGCTGCTCTAGAAACGTTAGCGATTGTTGCATATCGCCAACCGATTAC
AAGAACTGAAATGGAAGAGATTAGAGGAGTAAAAACTGATAAGGCGTTACAAACGTTAGTATCACACTTACTTATAAAAG
AAATGGGAAGAGCAGAAGGACCTGGGCGTCCTATTTTATATGGAACGACGAAAGAATTTTTGGACACGTTTGGATTAAAA
ACATTAGATGATTTACCTCCGCTTTCTGAAGAAAACGAACAAATGAATGAAGCGGATTTATTCTTCGGTTCTTTACAAGA
GATATCGAAATAA

Upstream 100 bases:

>100_bases
GTTTGGAACAAGAGAAAAATATTGAACCGAACGCATTGATTGTGATTCGGTTTTTTGATGTGTATTTTTATGGAGAAAAT
AGGAGGAAGGAGTTCGTAAA

Downstream 100 bases:

>100_bases
AAGCTTAGCATTTTGCTAAGCTTTTTTTGTATATCAATTATATACCGTGCCATACTAATTGAAAAAAGGAGACGAGTTAT
GAGAGGTATACGAAGTATTT

Product: segregation and condensation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MDRTEQKSIIEGLLFVSGDEGIYPEQIAKVLEIEGNEVIDILEEMQKECEGAHRGLQIVQYAKVYRFATKKEHASYYQKL
IEIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTDKALQTLVSHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLK
TLDDLPPLSEENEQMNEADLFFGSLQEISK

Sequences:

>Translated_190_residues
MDRTEQKSIIEGLLFVSGDEGIYPEQIAKVLEIEGNEVIDILEEMQKECEGAHRGLQIVQYAKVYRFATKKEHASYYQKL
IEIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTDKALQTLVSHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLK
TLDDLPPLSEENEQMNEADLFFGSLQEISK
>Mature_190_residues
MDRTEQKSIIEGLLFVSGDEGIYPEQIAKVLEIEGNEVIDILEEMQKECEGAHRGLQIVQYAKVYRFATKKEHASYYQKL
IEIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTDKALQTLVSHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLK
TLDDLPPLSEENEQMNEADLFFGSLQEISK

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_BACAA (C3P764)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002868357.1
- ProteinModelPortal:   C3P764
- SMR:   C3P764
- EnsemblBacteria:   EBBACT00000126666
- GeneID:   7853233
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_4299
- GeneTree:   EBGT00050000002500
- ProtClustDB:   PRK00135
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 21424; Mature: 21424

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRTEQKSIIEGLLFVSGDEGIYPEQIAKVLEIEGNEVIDILEEMQKECEGAHRGLQIVQ
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YAKVYRFATKKEHASYYQKLIEIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTD
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHH
KALQTLVSHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLPPLSEENEQMNEADL
HHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHH
FFGSLQEISK
HHHHHHHHCC
>Mature Secondary Structure
MDRTEQKSIIEGLLFVSGDEGIYPEQIAKVLEIEGNEVIDILEEMQKECEGAHRGLQIVQ
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YAKVYRFATKKEHASYYQKLIEIPTAASLSQAALETLAIVAYRQPITRTEMEEIRGVKTD
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHH
KALQTLVSHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLPPLSEENEQMNEADL
HHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHH
FFGSLQEISK
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA