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The map label for this gene is deoR [H]

Identifier: 49184765

GI number: 49184765

Start: 1775683

End: 1776630

Strand: Direct

Name: deoR [H]

Synonym: BAS1753

Alternate gene names: 49184765

Gene position: 1775683-1776630 (Clockwise)

Preceding gene: 49184764

Following gene: 49184766

Centisome position: 33.96

GC content: 35.34

Gene sequence:

>948_bases
ATGGATAAAGATAAACAACAATTAAGCGTTGAAGTTGCAAGATTATATTATCAATCAGATTATAGTCAGCAAGAAATTGC
TAACAAATTAAATATTTCAAGACCGACAATTTCTAGACTATTAAAGTACGCGAAAGAAAAAGGATTTGTTCAAATTAGTA
TAGCCGATCCATTTGCTGATTTAGATAATGTCGGCAATTTACTGAAAGAAAAATATAACTTGTTAGAAGCACATGTTGTA
TTTTCCCCAGTGCCAGAATATGCAACGATTACAGAGTATATAAGTAAATATGCAGCTGAGTATATGGAAAAGACGGTTAA
AAACGGTGATATCGTTGGTGTAAGCTGGGGAATGACGATGTATGAAATCGCTAGAAAAATCGTACCGCAACATGTAAAAG
GGGTAGAAGTTGTCCAGCTAAAAGGCGGTATTAGTCATTCGAGTGTAAATACATATGCGAATGAGACGATAGCTTTATTT
GCAGATGCTTTTCAAACGACGCCAAGAAATCTACCTCTTCCAGTTATATTTGATAATGCAGTGACAAAAGAATTAGTAGA
GCAGGATCGACATATTCATCACATTATCGAAATGGGGAAACAAGCCAATATTGCAATTTTCACTGTAGGAACAGTGCGAG
ACGAAGCGCTATTATTCCGATTAGGTTATTTCGATAAGGATGAAACGAGTTTACTCAAAAAACAATCGGTCGGTGACATT
TGTTCACGTTTCTTTGATGGAGACGGAAATATTAGTAGCGAAGAGATTAATCAGCGGACAATTGGAATTGAGTTAGAGGA
ACTGAAATTAAAGAAACGCTCTATTTTAGTTGCAGGTGGTAATAGAAAAATAAAAGCAATTGATGGTGCGTTACGTGGTG
GGTATGCAAATGTATTAATTATCGATCAGCATACGGCGAAAGAATTGTTACATTATAAAAAAGGTTAG

Upstream 100 bases:

>100_bases
GTTCAGGCATATAAAATTCAGTAGTCGAAATTTCTTGCATAAAGCTGTATAATGCTTGTAACGAAAGGGAAATACAGGAA
AGGATTTGTATTGAGTTACT

Downstream 100 bases:

>100_bases
AAATAAAAGGCTTTCTCAAGATATTCATTTTGAGAAAGCCTTTTATTTTGTATGTAGGAATTGATAGGAGTGTTTTTTGA
ATACAAATTGCAGTTTTTAA

Product: deoxyribonucleoside regulator DeoR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MDKDKQQLSVEVARLYYQSDYSQQEIANKLNISRPTISRLLKYAKEKGFVQISIADPFADLDNVGNLLKEKYNLLEAHVV
FSPVPEYATITEYISKYAAEYMEKTVKNGDIVGVSWGMTMYEIARKIVPQHVKGVEVVQLKGGISHSSVNTYANETIALF
ADAFQTTPRNLPLPVIFDNAVTKELVEQDRHIHHIIEMGKQANIAIFTVGTVRDEALLFRLGYFDKDETSLLKKQSVGDI
CSRFFDGDGNISSEEINQRTIGIELEELKLKKRSILVAGGNRKIKAIDGALRGGYANVLIIDQHTAKELLHYKKG

Sequences:

>Translated_315_residues
MDKDKQQLSVEVARLYYQSDYSQQEIANKLNISRPTISRLLKYAKEKGFVQISIADPFADLDNVGNLLKEKYNLLEAHVV
FSPVPEYATITEYISKYAAEYMEKTVKNGDIVGVSWGMTMYEIARKIVPQHVKGVEVVQLKGGISHSSVNTYANETIALF
ADAFQTTPRNLPLPVIFDNAVTKELVEQDRHIHHIIEMGKQANIAIFTVGTVRDEALLFRLGYFDKDETSLLKKQSVGDI
CSRFFDGDGNISSEEINQRTIGIELEELKLKKRSILVAGGNRKIKAIDGALRGGYANVLIIDQHTAKELLHYKKG
>Mature_315_residues
MDKDKQQLSVEVARLYYQSDYSQQEIANKLNISRPTISRLLKYAKEKGFVQISIADPFADLDNVGNLLKEKYNLLEAHVV
FSPVPEYATITEYISKYAAEYMEKTVKNGDIVGVSWGMTMYEIARKIVPQHVKGVEVVQLKGGISHSSVNTYANETIALF
ADAFQTTPRNLPLPVIFDNAVTKELVEQDRHIHHIIEMGKQANIAIFTVGTVRDEALLFRLGYFDKDETSLLKKQSVGDI
CSRFFDGDGNISSEEINQRTIGIELEELKLKKRSILVAGGNRKIKAIDGALRGGYANVLIIDQHTAKELLHYKKG

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=326, Percent_Identity=30.0613496932515, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787791, Length=308, Percent_Identity=26.6233766233766, Blast_Score=107, Evalue=7e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 35412; Mature: 35412

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKDKQQLSVEVARLYYQSDYSQQEIANKLNISRPTISRLLKYAKEKGFVQISIADPFAD
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEECCCCHH
LDNVGNLLKEKYNLLEAHVVFSPVPEYATITEYISKYAAEYMEKTVKNGDIVGVSWGMTM
HHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHH
YEIARKIVPQHVKGVEVVQLKGGISHSSVNTYANETIALFADAFQTTPRNLPLPVIFDNA
HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHCCHHHEEHHHHHCCCCCCCCCEEECHH
VTKELVEQDRHIHHIIEMGKQANIAIFTVGTVRDEALLFRLGYFDKDETSLLKKQSVGDI
HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHEEECCCCCCHHHHHHHHHHHHH
CSRFFDGDGNISSEEINQRTIGIELEELKLKKRSILVAGGNRKIKAIDGALRGGYANVLI
HHHHCCCCCCCCHHHHHHHHCCEEHHHHHHCEEEEEEECCCCEEEEECHHHCCCCEEEEE
IDQHTAKELLHYKKG
EECHHHHHHHHHCCC
>Mature Secondary Structure
MDKDKQQLSVEVARLYYQSDYSQQEIANKLNISRPTISRLLKYAKEKGFVQISIADPFAD
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEECCCCHH
LDNVGNLLKEKYNLLEAHVVFSPVPEYATITEYISKYAAEYMEKTVKNGDIVGVSWGMTM
HHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHH
YEIARKIVPQHVKGVEVVQLKGGISHSSVNTYANETIALFADAFQTTPRNLPLPVIFDNA
HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHCCHHHEEHHHHHCCCCCCCCCEEECHH
VTKELVEQDRHIHHIIEMGKQANIAIFTVGTVRDEALLFRLGYFDKDETSLLKKQSVGDI
HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHEEECCCCCCHHHHHHHHHHHHH
CSRFFDGDGNISSEEINQRTIGIELEELKLKKRSILVAGGNRKIKAIDGALRGGYANVLI
HHHHCCCCCCCCHHHHHHHHCCEEHHHHHHCEEEEEEECCCCEEEEECHHHCCCCEEEEE
IDQHTAKELLHYKKG
EECHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]