Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
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Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is hpd [H]
Identifier: 49183259
GI number: 49183259
Start: 226839
End: 227957
Strand: Direct
Name: hpd [H]
Synonym: BAS0226
Alternate gene names: 49183259
Gene position: 226839-227957 (Clockwise)
Preceding gene: 49183258
Following gene: 49183260
Centisome position: 4.34
GC content: 36.46
Gene sequence:
>1119_bases ATGAAACAAAAATCTATGGATACGCTAGCTGCACAAATGGAGGACTTTTTTCCAGTACGTGATGTAGATCATTTGGAATT TTACGTAGGAAATGCAAAGCAATCAAGTTATTATCTTGCGAGAGCATTCGGATTCAAAATTGTGGCTTACTCTGGATTAG AAACTGGTAATCGTGAAAAAGTATCTTATGTTCTTGTGCAAAAAAACATGCGTTTTGTTGTGTCTGGGGCTTTAAGTAGT GACAATCGTATTGCAGAGTTTGTAAAGACTCATGGTGATGGCGTGAAAGATGTAGCATTACTTGTTGACGATGTTGATAA AGCATACTCAGAAGCAGTGAAACGTGGTGCCGTCGCAATTGCTCCGCCTGTAGAGTTAACAGATGAGAACGGTACATTGA AAAAAGCAGTTATTGGTACGTATGGTGATACAATTCATACGCTTGTAGAGCGTAAAAATTATAAAGGGACATTTATGCCA GGATTCCAAAAGGCTGAGTTTGATATTCCATTTGAAGAGTCAGGTTTAATTGCTGTAGACCATGTAGTTGGTAATGTTGA AAAGATGGAAGAGTGGGTTAGTTATTACGAGAACGTTATGGGCTTTAAACAAATGATCCATTTTGATGATGATGATATTA GTACAGAGTATTCAGCATTAATGTCGAAGGTTATGACAAATGGAAGTCGTATTAAGTTCCCTATTAACGAGCCAGCAGAT GGAAAGAGAAAATCACAAATTCAAGAATATCTAGAGTTCTATAATGGAGCAGGTGTACAGCATCTTGCTTTACTAACAAA TGACATTGTTAAAACAGTAGAAGCGCTACGTGCAAATGGTGTGGAGTTTTTAGATACACCAGATACTTATTATGATGAGT TAACTGCACGAGTTGGAAAAATTGATGAGGAAATTGATAAGTTGAAAGAATTAAAGATTTTAGTAGATCGCGATGATGAA GGATACTTACTACAAATCTTTACGAAACCAATTGTAGATCGTCCAACTTTATTTATTGAAATCATTCAGCGTAAAGGTTC TCGTGGATTTGGAGAAGGAAACTTTAAAGCGTTATTCGAATCAATTGAAAGAGAACAAGAGCGTCGCGGGAATTTATAA
Upstream 100 bases:
>100_bases GTTAGCTTGCTAACTAATTTCTATTAATTGATGTTGGAAGCGTTTTCGATTGGTTTTAAGTATGAACCATTTAATCTATT TACAGAGGGATGAGGATTTT
Downstream 100 bases:
>100_bases AATTTATATCCACCAGCAATAATTCTTTTGCTGGTGGAAATTTCATTTTCATAGGGAGGAATCATGATGAAATTTGTTAC ATTTCGTCTTCCTTCAAAAG
Product: 4-hydroxyphenylpyruvate dioxygenase
Products: NA
Alternate protein names: 4HPPD; HPD; HPPDase [H]
Number of amino acids: Translated: 372; Mature: 372
Protein sequence:
>372_residues MKQKSMDTLAAQMEDFFPVRDVDHLEFYVGNAKQSSYYLARAFGFKIVAYSGLETGNREKVSYVLVQKNMRFVVSGALSS DNRIAEFVKTHGDGVKDVALLVDDVDKAYSEAVKRGAVAIAPPVELTDENGTLKKAVIGTYGDTIHTLVERKNYKGTFMP GFQKAEFDIPFEESGLIAVDHVVGNVEKMEEWVSYYENVMGFKQMIHFDDDDISTEYSALMSKVMTNGSRIKFPINEPAD GKRKSQIQEYLEFYNGAGVQHLALLTNDIVKTVEALRANGVEFLDTPDTYYDELTARVGKIDEEIDKLKELKILVDRDDE GYLLQIFTKPIVDRPTLFIEIIQRKGSRGFGEGNFKALFESIEREQERRGNL
Sequences:
>Translated_372_residues MKQKSMDTLAAQMEDFFPVRDVDHLEFYVGNAKQSSYYLARAFGFKIVAYSGLETGNREKVSYVLVQKNMRFVVSGALSS DNRIAEFVKTHGDGVKDVALLVDDVDKAYSEAVKRGAVAIAPPVELTDENGTLKKAVIGTYGDTIHTLVERKNYKGTFMP GFQKAEFDIPFEESGLIAVDHVVGNVEKMEEWVSYYENVMGFKQMIHFDDDDISTEYSALMSKVMTNGSRIKFPINEPAD GKRKSQIQEYLEFYNGAGVQHLALLTNDIVKTVEALRANGVEFLDTPDTYYDELTARVGKIDEEIDKLKELKILVDRDDE GYLLQIFTKPIVDRPTLFIEIIQRKGSRGFGEGNFKALFESIEREQERRGNL >Mature_372_residues MKQKSMDTLAAQMEDFFPVRDVDHLEFYVGNAKQSSYYLARAFGFKIVAYSGLETGNREKVSYVLVQKNMRFVVSGALSS DNRIAEFVKTHGDGVKDVALLVDDVDKAYSEAVKRGAVAIAPPVELTDENGTLKKAVIGTYGDTIHTLVERKNYKGTFMP GFQKAEFDIPFEESGLIAVDHVVGNVEKMEEWVSYYENVMGFKQMIHFDDDDISTEYSALMSKVMTNGSRIKFPINEPAD GKRKSQIQEYLEFYNGAGVQHLALLTNDIVKTVEALRANGVEFLDTPDTYYDELTARVGKIDEEIDKLKELKILVDRDDE GYLLQIFTKPIVDRPTLFIEIIQRKGSRGFGEGNFKALFESIEREQERRGNL
Specific function: Unknown
COG id: COG3185
COG function: function code ER; 4-hydroxyphenylpyruvate dioxygenase and related hemolysins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 4HPPD family [H]
Homologues:
Organism=Homo sapiens, GI4504477, Length=359, Percent_Identity=48.7465181058496, Blast_Score=328, Evalue=7e-90, Organism=Homo sapiens, GI285002264, Length=344, Percent_Identity=49.4186046511628, Blast_Score=311, Evalue=8e-85, Organism=Homo sapiens, GI14249394, Length=374, Percent_Identity=26.7379679144385, Blast_Score=137, Evalue=1e-32, Organism=Caenorhabditis elegans, GI17555220, Length=364, Percent_Identity=49.7252747252747, Blast_Score=340, Evalue=5e-94, Organism=Caenorhabditis elegans, GI17550752, Length=366, Percent_Identity=37.7049180327869, Blast_Score=241, Evalue=5e-64, Organism=Drosophila melanogaster, GI24667510, Length=361, Percent_Identity=49.0304709141274, Blast_Score=330, Evalue=1e-90, Organism=Drosophila melanogaster, GI21356105, Length=292, Percent_Identity=51.3698630136986, Blast_Score=286, Evalue=1e-77,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005956 - InterPro: IPR004360 [H]
Pfam domain/function: PF00903 Glyoxalase [H]
EC number: =1.13.11.27 [H]
Molecular weight: Translated: 42079; Mature: 42079
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQKSMDTLAAQMEDFFPVRDVDHLEFYVGNAKQSSYYLARAFGFKIVAYSGLETGNREK CCCHHHHHHHHHHHHCCCCCCCCHHHEEECCCCCCHHHHHHHHCEEEEEECCCCCCCCCC VSYVLVQKNMRFVVSGALSSDNRIAEFVKTHGDGVKDVALLVDDVDKAYSEAVKRGAVAI EEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE APPVELTDENGTLKKAVIGTYGDTIHTLVERKNYKGTFMPGFQKAEFDIPFEESGLIAVD CCCCEEECCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEH HVVGNVEKMEEWVSYYENVMGFKQMIHFDDDDISTEYSALMSKVMTNGSRIKFPINEPAD HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC GKRKSQIQEYLEFYNGAGVQHLALLTNDIVKTVEALRANGVEFLDTPDTYYDELTARVGK CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHH IDEEIDKLKELKILVDRDDEGYLLQIFTKPIVDRPTLFIEIIQRKGSRGFGEGNFKALFE HHHHHHHHHHHEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH SIEREQERRGNL HHHHHHHHCCCC >Mature Secondary Structure MKQKSMDTLAAQMEDFFPVRDVDHLEFYVGNAKQSSYYLARAFGFKIVAYSGLETGNREK CCCHHHHHHHHHHHHCCCCCCCCHHHEEECCCCCCHHHHHHHHCEEEEEECCCCCCCCCC VSYVLVQKNMRFVVSGALSSDNRIAEFVKTHGDGVKDVALLVDDVDKAYSEAVKRGAVAI EEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE APPVELTDENGTLKKAVIGTYGDTIHTLVERKNYKGTFMPGFQKAEFDIPFEESGLIAVD CCCCEEECCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEH HVVGNVEKMEEWVSYYENVMGFKQMIHFDDDDISTEYSALMSKVMTNGSRIKFPINEPAD HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC GKRKSQIQEYLEFYNGAGVQHLALLTNDIVKTVEALRANGVEFLDTPDTYYDELTARVGK CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHH IDEEIDKLKELKILVDRDDEGYLLQIFTKPIVDRPTLFIEIIQRKGSRGFGEGNFKALFE HHHHHHHHHHHEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH SIEREQERRGNL HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8071207; 11572948; 12692562 [H]