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The map label for this gene is yabF [H]

Identifier: 49183074

GI number: 49183074

Start: 44729

End: 45286

Strand: Direct

Name: yabF [H]

Synonym: BAS0039

Alternate gene names: 49183074

Gene position: 44729-45286 (Clockwise)

Preceding gene: 49183073

Following gene: 49183075

Centisome position: 0.86

GC content: 37.63

Gene sequence:

>558_bases
ATGAAAATTAAAGAGATTATCGTTGTAGAAGGTAAAGATGATACAGTTGCGATTAAGCGTGCTGTTGATGCGGATACAAT
TGAAACGAACGGTTCAGCAATCGGTGATCATGTTATTGAACAAGTTAAATTAGCGCTACAAAAACGAGGCGTTATTATTT
TCACAGATCCGGATTATCCTGGAGAGCGTATTCGAAAAATTATTTCTGATAAGGTGCCTGGATGTAAACATGCTTTTTTA
CCGAAGGAAGAAGCACTTGCTAAGAGGAAAAAAGGTGTCGGGATTGAACATGCTTCTAATGAATCAATTCGCCGTGCTTT
AGAGAATATACATGAAGAAATGGAAGCTTACACAAGTGAAATCAGTTGGAGCGATCTAGTCGATGCAGGTTTAGTGGGCG
GAGAAATGGCAAAGAGTCGCAGAGAAAGAATGGGTAAGCTATTAAAGATTGGTTATACAAACGCAAAACAGTTACATAAA
CGTTTACAAATGTTTCAAGTCTCAAAAGAATCATTTGCAGAAGCTTATAAGCAAGTCATACAGGAGGAAAGAAAATGA

Upstream 100 bases:

>100_bases
CATTCTATTTTTTAAAATGTAAGAATGGGGAAAATAATAATGGAAAAGTCGTCATTTTTTTGTTTTACTAAGTAGAGACG
AAACGAGTGTGGAGGCAAGC

Downstream 100 bases:

>100_bases
AGGATATCGCAACGCCAAATCGTACGAAAGACATTGTTGAAAAGTATGGATTTTCATTCAAAAAAAGTTTAGGACAAAAT
TTTTTAATTGATACGAATGT

Product: primase-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKIKEIIVVEGKDDTVAIKRAVDADTIETNGSAIGDHVIEQVKLALQKRGVIIFTDPDYPGERIRKIISDKVPGCKHAFL
PKEEALAKRKKGVGIEHASNESIRRALENIHEEMEAYTSEISWSDLVDAGLVGGEMAKSRRERMGKLLKIGYTNAKQLHK
RLQMFQVSKESFAEAYKQVIQEERK

Sequences:

>Translated_185_residues
MKIKEIIVVEGKDDTVAIKRAVDADTIETNGSAIGDHVIEQVKLALQKRGVIIFTDPDYPGERIRKIISDKVPGCKHAFL
PKEEALAKRKKGVGIEHASNESIRRALENIHEEMEAYTSEISWSDLVDAGLVGGEMAKSRRERMGKLLKIGYTNAKQLHK
RLQMFQVSKESFAEAYKQVIQEERK
>Mature_185_residues
MKIKEIIVVEGKDDTVAIKRAVDADTIETNGSAIGDHVIEQVKLALQKRGVIIFTDPDYPGERIRKIISDKVPGCKHAFL
PKEEALAKRKKGVGIEHASNESIRRALENIHEEMEAYTSEISWSDLVDAGLVGGEMAKSRRERMGKLLKIGYTNAKQLHK
RLQMFQVSKESFAEAYKQVIQEERK

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 20858; Mature: 20858

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKEIIVVEGKDDTVAIKRAVDADTIETNGSAIGDHVIEQVKLALQKRGVIIFTDPDYP
CCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC
GERIRKIISDKVPGCKHAFLPKEEALAKRKKGVGIEHASNESIRRALENIHEEMEAYTSE
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
ISWSDLVDAGLVGGEMAKSRRERMGKLLKIGYTNAKQLHKRLQMFQVSKESFAEAYKQVI
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QEERK
HHHCC
>Mature Secondary Structure
MKIKEIIVVEGKDDTVAIKRAVDADTIETNGSAIGDHVIEQVKLALQKRGVIIFTDPDYP
CCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC
GERIRKIISDKVPGCKHAFLPKEEALAKRKKGVGIEHASNESIRRALENIHEEMEAYTSE
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
ISWSDLVDAGLVGGEMAKSRRERMGKLLKIGYTNAKQLHKRLQMFQVSKESFAEAYKQVI
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QEERK
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]