Definition | Bacillus anthracis str. Sterne chromosome, complete genome. |
---|---|
Accession | NC_005945 |
Length | 5,228,663 |
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The map label for this gene is yabD [H]
Identifier: 49183073
GI number: 49183073
Start: 43747
End: 44514
Strand: Direct
Name: yabD [H]
Synonym: BAS0038
Alternate gene names: 49183073
Gene position: 43747-44514 (Clockwise)
Preceding gene: 49183072
Following gene: 49183074
Centisome position: 0.84
GC content: 37.5
Gene sequence:
>768_bases ATGTTGTTTGATACACATTCACATTTGAATGCAGAGCAATTTGAAGAAGACTTGCAAGAAGTTATTGCCCGAATGAAAGA AGCGGGGGTTACTTATACAGTTGTTGTTGGTTTTGATGAAGCAACGATAAAAAAGGCGATTGAATTAGCTGAAGCCTATG ATTTTATTTACGCTGCGGTTGGATGGCATCCAGTTGATGCAATCGACATGACAGAAGAGCATTTAGCTTGGTTAGAAGAA CTTGCTTCTCATCCTAAGGTCGTTGCACTTGGAGAAATGGGCTTAGATTATCACTGGGATAAGTCGCCAAAAGAAATACA GAAAGAAGTATTCCGTAAACAAATTACGTTGGCGAAAAAGGTAAAGTTGCCGATTATTATACATAACCGCGATGCAACGC AAGATATTGTTGATATTCTAGAAGAAGAGAATGCAGCTGAAGTAGGAGGTATTATGCATTGCTTTAGCGGCAGTGTAGAA GTAGCAGAGCGATGTGTTGATATGAACTTTTTAATTTCATTAGGTGGACCAGTTACATTTAAAAACGCTAAGAAGCCGAA AGAAGTTGCTACGGAGATTCCATTAGAGAAATTGTTAATAGAGACCGATTGTCCGTATTTAACACCACATCCATTTCGAG GAAAACGAAATGAACCGAGTTATGTAAAACTCGTAGCAGAAGAAATTGCGAACTTAAAAGGAATTTCTTATGAAGAAGTA GCGGAAATAACAACAAAAAATGCAAAAGCTTTATTTGGTGTTGAATAA
Upstream 100 bases:
>100_bases TCATTTTTGCATTAAGATTGTAGTATTGTTATCGTTAAGTTATGAAAGAGCTTATTTGCGTAGAATAAATTTGATTTCAA TATAAAAGGAGTTATGTATT
Downstream 100 bases:
>100_bases AAGAGTGGGAGGACCCATTCTTTTTTTATTTTTGTGAAAAAATAGCAGGAGTGACAGAAAAGATAAGATTGAATGAGTAG ATGTTACAATAAGGAGAGAG
Product: TatD family deoxyribonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MLFDTHSHLNAEQFEEDLQEVIARMKEAGVTYTVVVGFDEATIKKAIELAEAYDFIYAAVGWHPVDAIDMTEEHLAWLEE LASHPKVVALGEMGLDYHWDKSPKEIQKEVFRKQITLAKKVKLPIIIHNRDATQDIVDILEEENAAEVGGIMHCFSGSVE VAERCVDMNFLISLGGPVTFKNAKKPKEVATEIPLEKLLIETDCPYLTPHPFRGKRNEPSYVKLVAEEIANLKGISYEEV AEITTKNAKALFGVE
Sequences:
>Translated_255_residues MLFDTHSHLNAEQFEEDLQEVIARMKEAGVTYTVVVGFDEATIKKAIELAEAYDFIYAAVGWHPVDAIDMTEEHLAWLEE LASHPKVVALGEMGLDYHWDKSPKEIQKEVFRKQITLAKKVKLPIIIHNRDATQDIVDILEEENAAEVGGIMHCFSGSVE VAERCVDMNFLISLGGPVTFKNAKKPKEVATEIPLEKLLIETDCPYLTPHPFRGKRNEPSYVKLVAEEIANLKGISYEEV AEITTKNAKALFGVE >Mature_255_residues MLFDTHSHLNAEQFEEDLQEVIARMKEAGVTYTVVVGFDEATIKKAIELAEAYDFIYAAVGWHPVDAIDMTEEHLAWLEE LASHPKVVALGEMGLDYHWDKSPKEIQKEVFRKQITLAKKVKLPIIIHNRDATQDIVDILEEENAAEVGGIMHCFSGSVE VAERCVDMNFLISLGGPVTFKNAKKPKEVATEIPLEKLLIETDCPYLTPHPFRGKRNEPSYVKLVAEEIANLKGISYEEV AEITTKNAKALFGVE
Specific function: Unknown
COG id: COG0084
COG function: function code L; Mg-dependent DNase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tatD DNase family [H]
Homologues:
Organism=Homo sapiens, GI110349730, Length=264, Percent_Identity=33.7121212121212, Blast_Score=138, Evalue=6e-33, Organism=Homo sapiens, GI110349734, Length=264, Percent_Identity=33.7121212121212, Blast_Score=135, Evalue=3e-32, Organism=Homo sapiens, GI226061853, Length=270, Percent_Identity=33.3333333333333, Blast_Score=134, Evalue=6e-32, Organism=Homo sapiens, GI226061614, Length=253, Percent_Identity=33.596837944664, Blast_Score=131, Evalue=7e-31, Organism=Homo sapiens, GI14042943, Length=270, Percent_Identity=29.6296296296296, Blast_Score=115, Evalue=5e-26, Organism=Homo sapiens, GI225903424, Length=160, Percent_Identity=35, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI226061595, Length=227, Percent_Identity=29.9559471365639, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI225903439, Length=248, Percent_Identity=28.6290322580645, Blast_Score=99, Evalue=4e-21, Organism=Escherichia coli, GI1787342, Length=258, Percent_Identity=37.5968992248062, Blast_Score=186, Evalue=9e-49, Organism=Escherichia coli, GI48994985, Length=262, Percent_Identity=34.3511450381679, Blast_Score=147, Evalue=9e-37, Organism=Escherichia coli, GI87082439, Length=259, Percent_Identity=33.976833976834, Blast_Score=142, Evalue=2e-35, Organism=Caenorhabditis elegans, GI17559024, Length=281, Percent_Identity=35.2313167259786, Blast_Score=166, Evalue=1e-41, Organism=Caenorhabditis elegans, GI71980746, Length=261, Percent_Identity=27.5862068965517, Blast_Score=110, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17543026, Length=183, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17565396, Length=224, Percent_Identity=33.4821428571429, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24648690, Length=285, Percent_Identity=32.9824561403509, Blast_Score=137, Evalue=7e-33, Organism=Drosophila melanogaster, GI24586117, Length=284, Percent_Identity=28.8732394366197, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI221330018, Length=284, Percent_Identity=28.8732394366197, Blast_Score=106, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015992 - InterPro: IPR001130 - InterPro: IPR018228 - InterPro: IPR012278 - InterPro: IPR015991 [H]
Pfam domain/function: PF01026 TatD_DNase [H]
EC number: 3.1.21.-
Molecular weight: Translated: 28637; Mature: 28637
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFDTHSHLNAEQFEEDLQEVIARMKEAGVTYTVVVGFDEATIKKAIELAEAYDFIYAAV CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC GWHPVDAIDMTEEHLAWLEELASHPKVVALGEMGLDYHWDKSPKEIQKEVFRKQITLAKK CCCCCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH VKLPIIIHNRDATQDIVDILEEENAAEVGGIMHCFSGSVEVAERCVDMNFLISLGGPVTF CCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCHHHEEECCCCEEE KNAKKPKEVATEIPLEKLLIETDCPYLTPHPFRGKRNEPSYVKLVAEEIANLKGISYEEV CCCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHH AEITTKNAKALFGVE HHHHHCCCCEEECCC >Mature Secondary Structure MLFDTHSHLNAEQFEEDLQEVIARMKEAGVTYTVVVGFDEATIKKAIELAEAYDFIYAAV CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC GWHPVDAIDMTEEHLAWLEELASHPKVVALGEMGLDYHWDKSPKEIQKEVFRKQITLAKK CCCCCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH VKLPIIIHNRDATQDIVDILEEENAAEVGGIMHCFSGSVEVAERCVDMNFLISLGGPVTF CCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCHHHEEECCCCEEE KNAKKPKEVATEIPLEKLLIETDCPYLTPHPFRGKRNEPSYVKLVAEEIANLKGISYEEV CCCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHH AEITTKNAKALFGVE HHHHHCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]