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The map label for this gene is pdxS

Identifier: 49183049

GI number: 49183049

Start: 18515

End: 19402

Strand: Direct

Name: pdxS

Synonym: BAS0013

Alternate gene names: 49183049

Gene position: 18515-19402 (Clockwise)

Preceding gene: 49183048

Following gene: 49183050

Centisome position: 0.35

GC content: 42.79

Gene sequence:

>888_bases
ATGACAAATGTAACAGGGACAGAACGTGTAAAACGTGGAATGGCAGAAATGCAAAAAGGCGGCGTTATTATGGACGTAAT
TAACGCTGAACAAGCAAAAATTGCAGAAGAGGCAGGCGCAGTTGCCATTATGGCATTAGAGCGCGTACCAGCAGATATTC
GTGCAGCAGGTGGCGTTTCTCGTATGGCAGATCCAACAATCGTTGAAGAAGTTATGGGTGCTGTGTCAATTCCGGTTATG
GCAAAATGCCGTATCGGTCACCTTGTAGAAGCACGTGTATTAGAATCATTAGGGGTAGACTATATCGATGAGAGTGAAGT
ATTAACTCCTGCCGATGAAGTATACCATTTAAATAAACGTGATTACACTGTTCCATTTGTATGTGGTTGCCGTGATATCG
GAGAAGCTGCACGTCGTATTGCAGAAGGTGCATCTATGCTTCGTACAAAAGGTGAACCAGGAACAGGGAACATTGTAGAG
GCAGTTCGTCATATGCGTCAAGTCAATGCAGAAATCCGTCAAGTTGCAAGTCTACGTGAAGATGAGTTAATGACATATGC
AAAAAATACTGGTGCTCCTTATGAAGTACTACTTGAAATTAAACGTCTTGGTCGTTTGCCGGTTGTAAACTTTGCAGCAG
GTGGTGTAGCAACACCAGCAGATGCAGCGTTAATGATGCAATTAGGTGCGGATGGTGTATTTGTTGGATCTGGTATCTTT
AAATCAGAGAACCCAGCGAAATTTGCACGTGCAATCGTTGAAGCAACAACTCATTATGAAGATTACGAACTAATTGCAAG
CCTTTCAAAAGGATTAGGTAATGCGATGAAGGGTATCGAAATTTCAACGTTATTACCAGAACAACGCATGCAAGAGCGTG
GATGGTAA

Upstream 100 bases:

>100_bases
TAGTAGACAAGCATCTGATAGTTAGTGGTAGAATGTAAGAGTATTCTTAATTTTCGCCTTTAACGGGGAAAAGCAATTCA
CCTAGGGGGGGTTTTGTAAC

Downstream 100 bases:

>100_bases
TTGAAGGAGAACTTTAAAATGGTGAAAATTGGTGTACTAGGTCTTCAAGGTGCAGTTCGTGAACATGTAAAATCAGTTGA
AGCAAGTGGTGCAGAAGCTG

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MTNVTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAIMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVM
AKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVE
AVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF
KSENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEISTLLPEQRMQERGW

Sequences:

>Translated_295_residues
MTNVTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAIMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVM
AKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVE
AVRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF
KSENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEISTLLPEQRMQERGW
>Mature_294_residues
TNVTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAIMALERVPADIRAAGGVSRMADPTIVEEVMGAVSIPVMA
KCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKRDYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEA
VRHMRQVNAEIRQVASLREDELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK
SENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEISTLLPEQRMQERGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=291, Percent_Identity=56.3573883161512, Blast_Score=346, Evalue=3e-96,
Organism=Saccharomyces cerevisiae, GI6323996, Length=294, Percent_Identity=58.1632653061224, Blast_Score=338, Evalue=6e-94,
Organism=Saccharomyces cerevisiae, GI6321049, Length=294, Percent_Identity=58.1632653061224, Blast_Score=338, Evalue=6e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PDXS_BACAA (C3P8Q3)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002864666.1
- ProteinModelPortal:   C3P8Q3
- SMR:   C3P8Q3
- EnsemblBacteria:   EBBACT00000125508
- GeneID:   7850273
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_0016
- GeneTree:   EBGT00050000000844
- ProtClustDB:   PRK04180
- HAMAP:   MF_01824
- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852
- Gene3D:   G3DSA:3.20.20.70
- PIRSF:   PIRSF029271
- TIGRFAMs:   TIGR00343

Pfam domain/function: PF01680 SOR_SNZ; SSF51366 RibP_bind_barrel

EC number: NA

Molecular weight: Translated: 31804; Mature: 31673

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS01235 PDXS_SNZ_1; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNVTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAIMALERVPADIRAAGGVS
CCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCEEEEHHHHCCHHHHHHCCCH
RMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKR
HCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHEECCCC
DYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLRE
CCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF
HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCC
KSENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEISTLLPEQRMQERGW
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHCCC
>Mature Secondary Structure 
TNVTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAIMALERVPADIRAAGGVS
CCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCEEEEHHHHCCHHHHHHCCCH
RMADPTIVEEVMGAVSIPVMAKCRIGHLVEARVLESLGVDYIDESEVLTPADEVYHLNKR
HCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHEECCCC
DYTVPFVCGCRDIGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRQVNAEIRQVASLRE
CCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DELMTYAKNTGAPYEVLLEIKRLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF
HHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCCCC
KSENPAKFARAIVEATTHYEDYELIASLSKGLGNAMKGIEISTLLPEQRMQERGW
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA