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The map label for this gene is traF [H]

Identifier: 46447072

GI number: 46447072

Start: 1709634

End: 1710425

Strand: Direct

Name: traF [H]

Synonym: pc1438

Alternate gene names: 46447072

Gene position: 1709634-1710425 (Clockwise)

Preceding gene: 46447071

Following gene: 46447073

Centisome position: 70.81

GC content: 40.4

Gene sequence:

>792_bases
ATGAGTTTCAAAAATAACTTTGTCCGTTTAAGTCTTTTTTCTCTTTTGATAGGACAGGATTTGTCAGGAGGGTGGCTGAA
TCGAAAGGCGGAAGGATGGTTTTGGTACGAAGAGCGACAAAAGCAAATAGAGGAAGAAGATATCAAGCCTTCACCCCTTT
TACCCTCTATGGAACCTCCTCCTCCGTTAACCGCTACGGAACAAATGGGATTGAAGCGTCAAGAAATTGAAGAGAAGTTA
AACCAAGCCATGTTAAACCCCTCAGAAGAAAATGTACAAGCCTATATGCAAATTCAACAGCAATGGATCAATCAATCGGC
TCAATTTTCTCATATCTGGTTAAAAAATTTATTGACGTACCCTCAATTGGATTCTCGTTTAACGGCAGGACCTGTGACCC
ACTATGGGGCTCAAGTACAAAAACAACTTTTAAGGGAAGAGCGGGAGGGACGCATTCATTCTCTTGTACAGTCGTTTGGC
CTTTTCTTTTTTTATGAAGGCAGCAGTCCAATTTCTCAGGCCTTTTCCTTTGTCGTCAAAGCATTTGCCAAAAAATACGA
TTGGAAAGTAATTGCCATTTCCTGTGATGGGATCCAAATTCCCGATTTTGAAAACTATCCGCTGCATTCAAGCACTCTTC
AACATTTAGGTATTGAACAATTCCCCTCGCTCTATTTAGTTGAACCTAAACAACAAAAAATGGTGCCTATTGCTTTTGGT
CTCTCCTCCCTTGATCAAATTGAAGAAAATATTATTCTACAATTGCCCCCTCATCCTAGGAATCATCCATGA

Upstream 100 bases:

>100_bases
GCACAAATATCGCCAAAAAATTGCCAGAGAATCTTCCCGAACGTCTCAAGCAATTTCAAAATCGCCTACAGAAAGATATG
GACCGAGTCGAGGTGAAGAA

Downstream 100 bases:

>100_bases
AACCTCTTCTTTTTTTTATCCTCCTTTCCTTCTCTTTAACTTTAAGAGCTGATTTGCATAACGATCTCAAAAGTTATTTG
AGTGAGCTCAATACCTATTC

Product: putative F pilus assembly protein traF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSFKNNFVRLSLFSLLIGQDLSGGWLNRKAEGWFWYEERQKQIEEEDIKPSPLLPSMEPPPPLTATEQMGLKRQEIEEKL
NQAMLNPSEENVQAYMQIQQQWINQSAQFSHIWLKNLLTYPQLDSRLTAGPVTHYGAQVQKQLLREEREGRIHSLVQSFG
LFFFYEGSSPISQAFSFVVKAFAKKYDWKVIAISCDGIQIPDFENYPLHSSTLQHLGIEQFPSLYLVEPKQQKMVPIAFG
LSSLDQIEENIILQLPPHPRNHP

Sequences:

>Translated_263_residues
MSFKNNFVRLSLFSLLIGQDLSGGWLNRKAEGWFWYEERQKQIEEEDIKPSPLLPSMEPPPPLTATEQMGLKRQEIEEKL
NQAMLNPSEENVQAYMQIQQQWINQSAQFSHIWLKNLLTYPQLDSRLTAGPVTHYGAQVQKQLLREEREGRIHSLVQSFG
LFFFYEGSSPISQAFSFVVKAFAKKYDWKVIAISCDGIQIPDFENYPLHSSTLQHLGIEQFPSLYLVEPKQQKMVPIAFG
LSSLDQIEENIILQLPPHPRNHP
>Mature_262_residues
SFKNNFVRLSLFSLLIGQDLSGGWLNRKAEGWFWYEERQKQIEEEDIKPSPLLPSMEPPPPLTATEQMGLKRQEIEEKLN
QAMLNPSEENVQAYMQIQQQWINQSAQFSHIWLKNLLTYPQLDSRLTAGPVTHYGAQVQKQLLREEREGRIHSLVQSFGL
FFFYEGSSPISQAFSFVVKAFAKKYDWKVIAISCDGIQIPDFENYPLHSSTLQHLGIEQFPSLYLVEPKQQKMVPIAFGL
SSLDQIEENIILQLPPHPRNHP

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014110 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30414; Mature: 30283

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFKNNFVRLSLFSLLIGQDLSGGWLNRKAEGWFWYEERQKQIEEEDIKPSPLLPSMEPP
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCC
PPLTATEQMGLKRQEIEEKLNQAMLNPSEENVQAYMQIQQQWINQSAQFSHIWLKNLLTY
CCCCCHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
PQLDSRLTAGPVTHYGAQVQKQLLREEREGRIHSLVQSFGLFFFYEGSSPISQAFSFVVK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHH
AFAKKYDWKVIAISCDGIQIPDFENYPLHSSTLQHLGIEQFPSLYLVEPKQQKMVPIAFG
HHHHHCCCEEEEEEECCEECCCCCCCCCCHHHHHHCCHHHCCCEEEECCCHHCCCHHHHC
LSSLDQIEENIILQLPPHPRNHP
HHHHHHHHHCEEEECCCCCCCCC
>Mature Secondary Structure 
SFKNNFVRLSLFSLLIGQDLSGGWLNRKAEGWFWYEERQKQIEEEDIKPSPLLPSMEPP
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCC
PPLTATEQMGLKRQEIEEKLNQAMLNPSEENVQAYMQIQQQWINQSAQFSHIWLKNLLTY
CCCCCHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
PQLDSRLTAGPVTHYGAQVQKQLLREEREGRIHSLVQSFGLFFFYEGSSPISQAFSFVVK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHH
AFAKKYDWKVIAISCDGIQIPDFENYPLHSSTLQHLGIEQFPSLYLVEPKQQKMVPIAFG
HHHHHCCCEEEEEEECCEECCCCCCCCCCHHHHHHCCHHHCCCEEEECCCHHCCCHHHHC
LSSLDQIEENIILQLPPHPRNHP
HHHHHHHHHCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3042757; 7915817; 1593622 [H]