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The map label for this gene is rimM

Identifier: 45657430

GI number: 45657430

Start: 1919789

End: 1920319

Strand: Direct

Name: rimM

Synonym: LIC11557

Alternate gene names: 45657430

Gene position: 1919789-1920319 (Clockwise)

Preceding gene: 45657429

Following gene: 45657431

Centisome position: 44.88

GC content: 36.72

Gene sequence:

>531_bases
TTGACTAAAGAGTGGATCTCACTCGGGCAGTTAGGCAAACCATTTGGAATCAAAGGTTGGCTACGTCTAAATGTCCGAGA
AACTGTACTTTGCGAACTTAAAACTCCAATATCACTTAAACTCAGTAAGCCTGATTTTCATTTTCCAGAAAAGGAGATTA
CTCTTTTAGAAATTCGTCCTCATGGCGGAAAATTTATTGTTCGTTTTGAAGGAGTTACCACACCGGAAGAGGCTGCAAAG
TGGATTGGTGGTTTTCTTTTTTTACCCCAAAAACTTCTCCCTAAGATCGAAACCAAGAATGAGTTTTATATTACGGATCT
CATCGGCTTACAAGCGATTGACGAATCCGGAAAAAAACTGGATTGGAAATTAAAAGACGTTCAAGACAATCCTGCACATC
CTATTTTAGTTTTTGTAAAAGAAAATGGAGAAGAAATCCTCATTCCATTTTTACAAGTTTTTGTGGGTGATCTAGATCTA
GAAAAGAATACAATTGTCTTGATACAACCGGAGATTTGGAATGAAATTTAA

Upstream 100 bases:

>100_bases
GGAAAAGTAATCGGTAAAAACGGTCGTATTGCAAAATCCCTGCGCGCGATTCTTACTGCGGCATCTGTAAAAGCAGGAAA
AAACTTCTCCTTAGAAATCA

Downstream 100 bases:

>100_bases
TTTCATCACTCTTTTTCCAGACAAAATTCAATCGTATTTTTCGGAAGGTCTTCAACAAAAAGCAATCGAGTCCGGAGTGT
TTTCGGTAAATATAATCCAA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MTKEWISLGQLGKPFGIKGWLRLNVRETVLCELKTPISLKLSKPDFHFPEKEITLLEIRPHGGKFIVRFEGVTTPEEAAK
WIGGFLFLPQKLLPKIETKNEFYITDLIGLQAIDESGKKLDWKLKDVQDNPAHPILVFVKENGEEILIPFLQVFVGDLDL
EKNTIVLIQPEIWNEI

Sequences:

>Translated_176_residues
MTKEWISLGQLGKPFGIKGWLRLNVRETVLCELKTPISLKLSKPDFHFPEKEITLLEIRPHGGKFIVRFEGVTTPEEAAK
WIGGFLFLPQKLLPKIETKNEFYITDLIGLQAIDESGKKLDWKLKDVQDNPAHPILVFVKENGEEILIPFLQVFVGDLDL
EKNTIVLIQPEIWNEI
>Mature_175_residues
TKEWISLGQLGKPFGIKGWLRLNVRETVLCELKTPISLKLSKPDFHFPEKEITLLEIRPHGGKFIVRFEGVTTPEEAAKW
IGGFLFLPQKLLPKIETKNEFYITDLIGLQAIDESGKKLDWKLKDVQDNPAHPILVFVKENGEEILIPFLQVFVGDLDLE
KNTIVLIQPEIWNEI

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_LEPIC (Q72S29)

Other databases:

- EMBL:   AE016823
- RefSeq:   YP_001516.1
- ProteinModelPortal:   Q72S29
- SMR:   Q72S29
- GeneID:   2772693
- GenomeReviews:   AE016823_GR
- KEGG:   lic:LIC11557
- HOGENOM:   HBG527536
- OMA:   ENIREHN
- ProtClustDB:   PRK14590
- BioCyc:   LINT267671:LIC_11557-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20201; Mature: 20070

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKEWISLGQLGKPFGIKGWLRLNVRETVLCELKTPISLKLSKPDFHFPEKEITLLEIRP
CCCHHHHHCCCCCCCCCCEEEEEEECEEEEEEECCCEEEEECCCCCCCCCCCEEEEEEEC
HGGKFIVRFEGVTTPEEAAKWIGGFLFLPQKLLPKIETKNEFYITDLIGLQAIDESGKKL
CCCEEEEEECCCCCHHHHHHHHHHHEECCHHHCCCCCCCCCEEEEEECCEEEECCCCCEE
DWKLKDVQDNPAHPILVFVKENGEEILIPFLQVFVGDLDLEKNTIVLIQPEIWNEI
EEEEECCCCCCCCEEEEEEECCCCEEEHHHHHHHHCCCCCCCCEEEEECCHHCCCC
>Mature Secondary Structure 
TKEWISLGQLGKPFGIKGWLRLNVRETVLCELKTPISLKLSKPDFHFPEKEITLLEIRP
CCHHHHHCCCCCCCCCCEEEEEEECEEEEEEECCCEEEEECCCCCCCCCCCEEEEEEEC
HGGKFIVRFEGVTTPEEAAKWIGGFLFLPQKLLPKIETKNEFYITDLIGLQAIDESGKKL
CCCEEEEEECCCCCHHHHHHHHHHHEECCHHHCCCCCCCCCEEEEEECCEEEECCCCCEE
DWKLKDVQDNPAHPILVFVKENGEEILIPFLQVFVGDLDLEKNTIVLIQPEIWNEI
EEEEECCCCCCCCEEEEEEECCCCEEEHHHHHHHHCCCCCCCCEEEEECCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA