Click here to switch to the map view.

The map label for this gene is 45657429

Identifier: 45657429

GI number: 45657429

Start: 1919566

End: 1919796

Strand: Direct

Name: 45657429

Synonym: LIC11556

Alternate gene names: NA

Gene position: 1919566-1919796 (Clockwise)

Preceding gene: 161621775

Following gene: 45657430

Centisome position: 44.88

GC content: 39.39

Gene sequence:

>231_bases
ATGGAAGAATTACTGAAGTACATAGTTGCTTCTCTTGTTGAATTTCCCGAAGAAATTGTAATTCGTGAAATTGAAGGGGA
AGAACAAAATATCATCGAACTACGAGTCTCCCCGAAAGACGTGGGAAAAGTAATCGGTAAAAACGGTCGTATTGCAAAAT
CCCTGCGCGCGATTCTTACTGCGGCATCTGTAAAAGCAGGAAAAAACTTCTCCTTAGAAATCATTGACTAA

Upstream 100 bases:

>100_bases
TTACTTGGCTAAAGAACGGAGCTCAACCTACCGGAACCGTTTTAAACCTGTTCAAAAATGCAGGAATTTGGGCGGAATAT
AAAACCACTCTCAAAAAGTA

Downstream 100 bases:

>100_bases
AGAGTGGATCTCACTCGGGCAGTTAGGCAAACCATTTGGAATCAAAGGTTGGCTACGTCTAAATGTCCGAGAAACTGTAC
TTTGCGAACTTAAAACTCCA

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MEELLKYIVASLVEFPEEIVIREIEGEEQNIIELRVSPKDVGKVIGKNGRIAKSLRAILTAASVKAGKNFSLEIID

Sequences:

>Translated_76_residues
MEELLKYIVASLVEFPEEIVIREIEGEEQNIIELRVSPKDVGKVIGKNGRIAKSLRAILTAASVKAGKNFSLEIID
>Mature_76_residues
MEELLKYIVASLVEFPEEIVIREIEGEEQNIIELRVSPKDVGKVIGKNGRIAKSLRAILTAASVKAGKNFSLEIID

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1556_LEPIC (Q72S30)

Other databases:

- EMBL:   AE016823
- RefSeq:   YP_001515.1
- GeneID:   2770967
- GenomeReviews:   AE016823_GR
- KEGG:   lic:LIC11556
- HOGENOM:   HBG668070
- OMA:   QGRIARA
- ProtClustDB:   CLSK574382
- BioCyc:   LINT267671:LIC_11556-MONOMER
- HAMAP:   MF_00088
- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR018111
- InterPro:   IPR020627

Pfam domain/function: PF00013 KH_1; SSF54814 KH_prok

EC number: NA

Molecular weight: Translated: 8423; Mature: 8423

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEELLKYIVASLVEFPEEIVIREIEGEEQNIIELRVSPKDVGKVIGKNGRIAKSLRAILT
CHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEECHHHHHHHHCCCCCHHHHHHHHHH
AASVKAGKNFSLEIID
HHHHCCCCCCEEEEEC
>Mature Secondary Structure
MEELLKYIVASLVEFPEEIVIREIEGEEQNIIELRVSPKDVGKVIGKNGRIAKSLRAILT
CHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEECHHHHHHHHCCCCCHHHHHHHHHH
AASVKAGKNFSLEIID
HHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA