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The map label for this gene is cph2 [H]

Identifier: 45657320

GI number: 45657320

Start: 1780063

End: 1781055

Strand: Direct

Name: cph2 [H]

Synonym: LIC11444

Alternate gene names: 45657320

Gene position: 1780063-1781055 (Clockwise)

Preceding gene: 45657316

Following gene: 45657322

Centisome position: 41.62

GC content: 39.88

Gene sequence:

>993_bases
ATGGATTCCATTCTTATTTTAGACGATGCACAGGAGAACTGTATGTTGATGCAGGGCATCCTGAGAAAGTCCGGATACAA
GAATACTTTTACAAGCCAGTCCCCTGACGAGGTCATTGGTTGGTTGAATTTAAAAAATCAAGAACCTCCTCAAAAAGAAT
GTTCTTTGATTCTTTTAGATATTTTACTTCCAGGAATTACAGGACTTGAAATCCTGAAATTGATCCGTGAAAAGGAGGAA
TTGAAAGATATTCCTGTGATTATGATCACGGCTCTAAAAGAATCGGATGTTTTGCAAAAGGCCTTCGATTCTGGTGCAAT
CGATTACGTAGTAAAACCGTTTGACGCGATCGAACTTTTGGCAAGAGTTCGTTCGGCTCTTCGACTTTTTGAAGAAATGA
CTCGAAGAAAGGAAAGAGAAAAGGAGTTGGAAAACCTGACCGATCAACTTCAAGAAGTCAACGCCTATCTAGTTGCCATT
TCAAGGACGGATTCTCTGACGGGACTTTACAATCGTAGATACTTTGATGAGATTTTATCTACAGAATGGAAACGTTGCTG
GAGAACTGAAGCTAGTATTGCTCTCATTATGTTGGATATAGATCATTTTAAACTTTATAACGATACTTATGGTCATCAAG
GTGGTGATCAATGTTTAAAACAAGTGGCTTCTGCGATTCGAGATTGTGCAAGAAGGGCGGGGGACGTGGCGGCGAGATAT
GGTGGAGAAGAATTTGCGATCATACTACCTGAAACGACCGAGTCGAATGCCGTTGTTGTAAGTCGAAATATTTTGGAAAA
TATAGAAAATCTGGGAATACCACATTCTGCGTCGAAGACTAATTCGATAGTAACTGTCAGTATTGGTATGGCTACCTTAA
GCCCAAGTCCTGAAAATTCCATCACGGAGTTAATCGAACGTGCTGACAAGGCTCTTTATTTAGCAAAAGAGGAAGGTAGA
AACTGTCTTCGATTTTATCCTCAAAATGATTGA

Upstream 100 bases:

>100_bases
TTTTAAAAAATCGTTTGATTTCATGGATTATTAAAGGGACATTTGTATTCCTTTCTAGTCTGGCACCGCCCGTTGTAAAA
AACCGAGGAGAAAATTTGAA

Downstream 100 bases:

>100_bases
TTTTTTTAGTTATAGATTCATCCTCAAGTTAAGAGTTTGCCTCAAAACTTTAAAAAAATAAAATATGCAGAATTACTTAT
TTTCTTTTTTTATGTGAATG

Product: response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MDSILILDDAQENCMLMQGILRKSGYKNTFTSQSPDEVIGWLNLKNQEPPQKECSLILLDILLPGITGLEILKLIREKEE
LKDIPVIMITALKESDVLQKAFDSGAIDYVVKPFDAIELLARVRSALRLFEEMTRRKEREKELENLTDQLQEVNAYLVAI
SRTDSLTGLYNRRYFDEILSTEWKRCWRTEASIALIMLDIDHFKLYNDTYGHQGGDQCLKQVASAIRDCARRAGDVAARY
GGEEFAIILPETTESNAVVVSRNILENIENLGIPHSASKTNSIVTVSIGMATLSPSPENSITELIERADKALYLAKEEGR
NCLRFYPQND

Sequences:

>Translated_330_residues
MDSILILDDAQENCMLMQGILRKSGYKNTFTSQSPDEVIGWLNLKNQEPPQKECSLILLDILLPGITGLEILKLIREKEE
LKDIPVIMITALKESDVLQKAFDSGAIDYVVKPFDAIELLARVRSALRLFEEMTRRKEREKELENLTDQLQEVNAYLVAI
SRTDSLTGLYNRRYFDEILSTEWKRCWRTEASIALIMLDIDHFKLYNDTYGHQGGDQCLKQVASAIRDCARRAGDVAARY
GGEEFAIILPETTESNAVVVSRNILENIENLGIPHSASKTNSIVTVSIGMATLSPSPENSITELIERADKALYLAKEEGR
NCLRFYPQND
>Mature_330_residues
MDSILILDDAQENCMLMQGILRKSGYKNTFTSQSPDEVIGWLNLKNQEPPQKECSLILLDILLPGITGLEILKLIREKEE
LKDIPVIMITALKESDVLQKAFDSGAIDYVVKPFDAIELLARVRSALRLFEEMTRRKEREKELENLTDQLQEVNAYLVAI
SRTDSLTGLYNRRYFDEILSTEWKRCWRTEASIALIMLDIDHFKLYNDTYGHQGGDQCLKQVASAIRDCARRAGDVAARY
GGEEFAIILPETTESNAVVVSRNILENIENLGIPHSASKTNSIVTVSIGMATLSPSPENSITELIERADKALYLAKEEGR
NCLRFYPQND

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=35.2601156069364, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI145693134, Length=181, Percent_Identity=34.2541436464088, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87081881, Length=198, Percent_Identity=33.8383838383838, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1787816, Length=192, Percent_Identity=35.9375, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=37.8048780487805, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=37.888198757764, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=34.5029239766082, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081977, Length=197, Percent_Identity=31.4720812182741, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787802, Length=161, Percent_Identity=32.2981366459627, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788381, Length=166, Percent_Identity=31.9277108433735, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87081974, Length=157, Percent_Identity=30.5732484076433, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082012, Length=128, Percent_Identity=40.625, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788085, Length=158, Percent_Identity=31.6455696202532, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788956, Length=180, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1786599, Length=130, Percent_Identity=30, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788394, Length=126, Percent_Identity=38.8888888888889, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786784, Length=76, Percent_Identity=43.421052631579, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 37321; Mature: 37321

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSILILDDAQENCMLMQGILRKSGYKNTFTSQSPDEVIGWLNLKNQEPPQKECSLILLD
CCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHEEHHCCCCCCCCHHHHHHHHHH
ILLPGITGLEILKLIREKEELKDIPVIMITALKESDVLQKAFDSGAIDYVVKPFDAIELL
HHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHHCCCHHHHHHH
ARVRSALRLFEEMTRRKEREKELENLTDQLQEVNAYLVAISRTDSLTGLYNRRYFDEILS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHH
TEWKRCWRTEASIALIMLDIDHFKLYNDTYGHQGGDQCLKQVASAIRDCARRAGDVAARY
HHHHHHHCCCCCEEEEEEECCHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GGEEFAIILPETTESNAVVVSRNILENIENLGIPHSASKTNSIVTVSIGMATLSPSPENS
CCCEEEEEECCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCHH
ITELIERADKALYLAKEEGRNCLRFYPQND
HHHHHHHHHHHEEEEHHHCCCEECCCCCCC
>Mature Secondary Structure
MDSILILDDAQENCMLMQGILRKSGYKNTFTSQSPDEVIGWLNLKNQEPPQKECSLILLD
CCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHEEHHCCCCCCCCHHHHHHHHHH
ILLPGITGLEILKLIREKEELKDIPVIMITALKESDVLQKAFDSGAIDYVVKPFDAIELL
HHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCHHHHCCCHHHHHHH
ARVRSALRLFEEMTRRKEREKELENLTDQLQEVNAYLVAISRTDSLTGLYNRRYFDEILS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHH
TEWKRCWRTEASIALIMLDIDHFKLYNDTYGHQGGDQCLKQVASAIRDCARRAGDVAARY
HHHHHHHCCCCCEEEEEEECCHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GGEEFAIILPETTESNAVVVSRNILENIENLGIPHSASKTNSIVTVSIGMATLSPSPENS
CCCEEEEEECCCCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCHH
ITELIERADKALYLAKEEGRNCLRFYPQND
HHHHHHHHHHHEEEEHHHCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]