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The map label for this gene is cph1 [H]

Identifier: 45657315

GI number: 45657315

Start: 1774839

End: 1775876

Strand: Direct

Name: cph1 [H]

Synonym: LIC11439

Alternate gene names: 45657315

Gene position: 1774839-1775876 (Clockwise)

Preceding gene: 45657314

Following gene: 45657316

Centisome position: 41.5

GC content: 30.64

Gene sequence:

>1038_bases
TTGGAAATGATTGAATGCCAAGTTTTGTCTCATTTAAGGACCCCAGTCGCTATTTTAGATTTGAATTTGCGTATTATAAA
ATGCAATTGCTCTTTTGTAAAAGTTTGCTTTTCTTCTGGAACTCGAGAGCTAATAAATCAAAGATTAGATCAAATACTCT
CCTTTCAAAATTCATCTTTATTAGAAAGATTTAGGAATTGTGAATTCAATCGAACGATCTTTTTTGAAGAACAACTTTTG
AACCCTTTTAAAGAAAAAGTAAATTTTCAAGGTTCTATGACTAAACAAAAATCTGAGGAAAGTGAGTTTCTTTTTTTAGA
AATCTCGGATTTAAAAATTAAAGCAAAGGAAATGGAAATTGCTGCTGTTGTTTCCAGGATGTACCATGATTTGCAAGAAC
CAATACGAAATCAGAATACTTTTTTAAATCTTTTATACGAAAAATATTCAAATTCTCTAAATGAAAAAGGTAAAGAGTTT
TTGCGGTTTAGTATTCAATCTTCCCAGCGTCTTTGGGAGCGGATCAATGGCTTACTTCTATTTTTAAAAATTGAAAAGGA
AAGAAATATATTTAAAACTGTTTCTCTTCAAAAAATTTTAGAAGAAAGTATTACACTTCTTCATGAAAATCTAATAAATA
CCAATATACATATTGAAGTCAAAGGGGAATTTCCAGATATTTTAGGAAGTAGACCTCTCCTCAAAGAACTTTTTTTAAAT
CTAATTACAAATTCTATTCGGTTCAGAAATAAAAATGTGGCTTGTAAAGTTTGTATTTCTTACGACTCAAAACCTCAGTT
TCACCTAATTCATGTTATAGACAACGGAATAGGTGTTTATTCTTTGGAAAAAAATTATTTCATAGATTTATTTAGAACGT
TTCATTCATCGGAAGAACTTTCCGGGGCTGGAACGGGACTTTTTTTTTGCAAAAAGATTGCGGAACTTCACGGAGGAAAT
CTGGAAATAGAAACCGATCGTACTTCCGGTTTTGGTGTAATCATACGTTTTCCCAGAGAATTTATTTTAGAACGATGA

Upstream 100 bases:

>100_bases
AGTAAGCTAAAAAATTTAGATAAATATTATTCTACTGAAATTTAAAGAGTTCATTTTTGAGAATCTTATATGAGACTTTT
TCAAGGTATACTGAGGATCA

Downstream 100 bases:

>100_bases
ATATGTAGAGAGTTTCATTCTTATGTTTAAAGATACTTTTTCAGTTCTTTTGATCGAGGATTCAAATGCGGATTACAGAT
TGATTCAGGAATATCTGGGT

Product: histidine kinase sensor protein

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MEMIECQVLSHLRTPVAILDLNLRIIKCNCSFVKVCFSSGTRELINQRLDQILSFQNSSLLERFRNCEFNRTIFFEEQLL
NPFKEKVNFQGSMTKQKSEESEFLFLEISDLKIKAKEMEIAAVVSRMYHDLQEPIRNQNTFLNLLYEKYSNSLNEKGKEF
LRFSIQSSQRLWERINGLLLFLKIEKERNIFKTVSLQKILEESITLLHENLINTNIHIEVKGEFPDILGSRPLLKELFLN
LITNSIRFRNKNVACKVCISYDSKPQFHLIHVIDNGIGVYSLEKNYFIDLFRTFHSSEELSGAGTGLFFCKKIAELHGGN
LEIETDRTSGFGVIIRFPREFILER

Sequences:

>Translated_345_residues
MEMIECQVLSHLRTPVAILDLNLRIIKCNCSFVKVCFSSGTRELINQRLDQILSFQNSSLLERFRNCEFNRTIFFEEQLL
NPFKEKVNFQGSMTKQKSEESEFLFLEISDLKIKAKEMEIAAVVSRMYHDLQEPIRNQNTFLNLLYEKYSNSLNEKGKEF
LRFSIQSSQRLWERINGLLLFLKIEKERNIFKTVSLQKILEESITLLHENLINTNIHIEVKGEFPDILGSRPLLKELFLN
LITNSIRFRNKNVACKVCISYDSKPQFHLIHVIDNGIGVYSLEKNYFIDLFRTFHSSEELSGAGTGLFFCKKIAELHGGN
LEIETDRTSGFGVIIRFPREFILER
>Mature_345_residues
MEMIECQVLSHLRTPVAILDLNLRIIKCNCSFVKVCFSSGTRELINQRLDQILSFQNSSLLERFRNCEFNRTIFFEEQLL
NPFKEKVNFQGSMTKQKSEESEFLFLEISDLKIKAKEMEIAAVVSRMYHDLQEPIRNQNTFLNLLYEKYSNSLNEKGKEF
LRFSIQSSQRLWERINGLLLFLKIEKERNIFKTVSLQKILEESITLLHENLINTNIHIEVKGEFPDILGSRPLLKELFLN
LITNSIRFRNKNVACKVCISYDSKPQFHLIHVIDNGIGVYSLEKNYFIDLFRTFHSSEELSGAGTGLFFCKKIAELHGGN
LEIETDRTSGFGVIIRFPREFILER

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 40312; Mature: 40312

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMIECQVLSHLRTPVAILDLNLRIIKCNCSFVKVCFSSGTRELINQRLDQILSFQNSSL
CCCHHHHHHHHHCCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHH
LERFRNCEFNRTIFFEEQLLNPFKEKVNFQGSMTKQKSEESEFLFLEISDLKIKAKEMEI
HHHHHCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCEEEHHHHHH
AAVVSRMYHDLQEPIRNQNTFLNLLYEKYSNSLNEKGKEFLRFSIQSSQRLWERINGLLL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
FLKIEKERNIFKTVSLQKILEESITLLHENLINTNIHIEVKGEFPDILGSRPLLKELFLN
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHCCCHHHHHHHHH
LITNSIRFRNKNVACKVCISYDSKPQFHLIHVIDNGIGVYSLEKNYFIDLFRTFHSSEEL
HHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCCC
SGAGTGLFFCKKIAELHGGNLEIETDRTSGFGVIIRFPREFILER
CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHCCC
>Mature Secondary Structure
MEMIECQVLSHLRTPVAILDLNLRIIKCNCSFVKVCFSSGTRELINQRLDQILSFQNSSL
CCCHHHHHHHHHCCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHH
LERFRNCEFNRTIFFEEQLLNPFKEKVNFQGSMTKQKSEESEFLFLEISDLKIKAKEMEI
HHHHHCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCEEEHHHHHH
AAVVSRMYHDLQEPIRNQNTFLNLLYEKYSNSLNEKGKEFLRFSIQSSQRLWERINGLLL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
FLKIEKERNIFKTVSLQKILEESITLLHENLINTNIHIEVKGEFPDILGSRPLLKELFLN
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHCCCHHHHHHHHH
LITNSIRFRNKNVACKVCISYDSKPQFHLIHVIDNGIGVYSLEKNYFIDLFRTFHSSEEL
HHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCEEEEECCHHHHHHHHHHCCCCCC
SGAGTGLFFCKKIAELHGGNLEIETDRTSGFGVIIRFPREFILER
CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]