Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
---|---|
Accession | NC_002944 |
Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is 41410171
Identifier: 41410171
GI number: 41410171
Start: 4539693
End: 4540295
Strand: Direct
Name: 41410171
Synonym: MAP4073
Alternate gene names: NA
Gene position: 4539693-4540295 (Clockwise)
Preceding gene: 41410170
Following gene: 41410172
Centisome position: 93.99
GC content: 72.47
Gene sequence:
>603_bases GTGCCGGTGAGCGAGCCGGCCGGCTACGTGGAGGTTCGGGCCTACGCCGAACTCAACGACTTTCTGCCCGCCGAGTCGCG CGGCGCCGCGGTGCGCCGCCCGTTCCGGGCGCACCAGACCGTCAAGGATGTGTTGGAGGCGATGGGAATTCCGCACACCG AGGTCGACCTCATCGTGGTGAACGGCTCCGTCCACGGGTTCGACCACCGCCCCCGGGCCGGCGACCGCATCGCCGCCTAC CCGATGTTCGAGGCGCTCGACATCGGGCCCACCGCCCGGCTGCGGCCGGTGCCGTTGCGCGATCCCCGGTTCGTCGTCGA CGTCAACCTGGGCCGGCTGGCCTGGCTGTTGCGGCTGTTCGGGTTCGACGTGTGGTGGTCGAACGACGCCGACGACCAGA CCCTGGCCGCGATCAGCGCCGAGCAGCACCGCATCCTGCTGACCCGCGACCGCGGACTGCTCAAGCGCCGCGCGGTCACC CACGGACTGTTCGTGCGCCCCGACGACCCCGAGGAGCAGGCGCTGGGCGTCATCCGCCGGCTCGACCTGACCGGGCGGCT GGCGCCGCTGTCGCGCTGCGTGCGGTGCAACGCGGGACCCTGA
Upstream 100 bases:
>100_bases GCGCCGAGGCGATCGGGCACGCGGTCCGGCGGGCCGCGACGCAGGCCGGCTTCGCGCAACCCGTCGTCACCCGAACCCGC GCCGCCGCGGGCGCGGGCCC
Downstream 100 bases:
>100_bases CCGCGGTCGCCAAGGACGAGGTGAGCGACCAGCTGCCGCCGCTGACCCGGCGGTACTACGACGACTTCAGCCGCTGCACC CGATGCGGCCGCATCTACTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MPVSEPAGYVEVRAYAELNDFLPAESRGAAVRRPFRAHQTVKDVLEAMGIPHTEVDLIVVNGSVHGFDHRPRAGDRIAAY PMFEALDIGPTARLRPVPLRDPRFVVDVNLGRLAWLLRLFGFDVWWSNDADDQTLAAISAEQHRILLTRDRGLLKRRAVT HGLFVRPDDPEEQALGVIRRLDLTGRLAPLSRCVRCNAGP
Sequences:
>Translated_200_residues MPVSEPAGYVEVRAYAELNDFLPAESRGAAVRRPFRAHQTVKDVLEAMGIPHTEVDLIVVNGSVHGFDHRPRAGDRIAAY PMFEALDIGPTARLRPVPLRDPRFVVDVNLGRLAWLLRLFGFDVWWSNDADDQTLAAISAEQHRILLTRDRGLLKRRAVT HGLFVRPDDPEEQALGVIRRLDLTGRLAPLSRCVRCNAGP >Mature_199_residues PVSEPAGYVEVRAYAELNDFLPAESRGAAVRRPFRAHQTVKDVLEAMGIPHTEVDLIVVNGSVHGFDHRPRAGDRIAAYP MFEALDIGPTARLRPVPLRDPRFVVDVNLGRLAWLLRLFGFDVWWSNDADDQTLAAISAEQHRILLTRDRGLLKRRAVTH GLFVRPDDPEEQALGVIRRLDLTGRLAPLSRCVRCNAGP
Specific function: Unknown
COG id: COG1656
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22371; Mature: 22240
Theoretical pI: Translated: 8.27; Mature: 8.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVSEPAGYVEVRAYAELNDFLPAESRGAAVRRPFRAHQTVKDVLEAMGIPHTEVDLIVV CCCCCCCCEEEEEEEEHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEE NGSVHGFDHRPRAGDRIAAYPMFEALDIGPTARLRPVPLRDPRFVVDVNLGRLAWLLRLF CCCEECCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH GFDVWWSNDADDQTLAAISAEQHRILLTRDRGLLKRRAVTHGLFVRPDDPEEQALGVIRR CCCEEECCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHHCCEEECCCCCHHHHHHHHHH LDLTGRLAPLSRCVRCNAGP HCCCCCHHHHHHHHCCCCCC >Mature Secondary Structure PVSEPAGYVEVRAYAELNDFLPAESRGAAVRRPFRAHQTVKDVLEAMGIPHTEVDLIVV CCCCCCCEEEEEEEEHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEE NGSVHGFDHRPRAGDRIAAYPMFEALDIGPTARLRPVPLRDPRFVVDVNLGRLAWLLRLF CCCEECCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH GFDVWWSNDADDQTLAAISAEQHRILLTRDRGLLKRRAVTHGLFVRPDDPEEQALGVIRR CCCEEECCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHHCCEEECCCCCHHHHHHHHHH LDLTGRLAPLSRCVRCNAGP HCCCCCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA