Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
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Accession | NC_002944 |
Length | 4,829,781 |
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The map label for this gene is 41410168
Identifier: 41410168
GI number: 41410168
Start: 4535311
End: 4537404
Strand: Reverse
Name: 41410168
Synonym: MAP4070c
Alternate gene names: NA
Gene position: 4537404-4535311 (Counterclockwise)
Preceding gene: 41410173
Following gene: 41410167
Centisome position: 93.95
GC content: 73.45
Gene sequence:
>2094_bases GTGATCGGCTCCGATCCCGGCTTGCTGCGGCTGCGCATGGCGACTCGGACCACGGCCGCGCTCGGGCTGTCACTGCTGGC GCTGTGGCTGCTGACCAGGGCGACGGGACAGCCGTTGACCGTCGCGTTGCTGGGTGTGGTGATCACCATGGTCGCGTCGC GCTCGGTCAACGAGCCCGATCCGCGCCAGCAGCGGATCACCATGGCGCTGTTGCCGGTTCCGGCCGCGGTGGCCATCACG GCCGCTGCGGTGCTGGCGCCGCACCCGGTGGCCGGCGACGTGGTGTTCGTGCTGATTGTGTTCGCGGCGGCCTACATTCG CCGCTTCGGCGCGCGGGGCCGCGCGCTGGGCACGGTGTGCACGTATGTGATGACTAGCCATGTGCTGCCCGACCGGCCGG AGCGGGTGCTGCGGGCCACCATCCGGGCGCTGCGGGCCCGCATGGCGATCGTGATCGACACCACCGCCGAGGCGGTGCGC ACCGGCCGGCTGGACGAGCGGCGGCGCCGGCGCATGCGGGCCCGCACCATCCGGCTCAACGAGACCGCCCTGATGGTGCA GAGCCAGATCGAGGACAGGGCCGACCCGGGCACGCTGTGGCCCGGAGTCACCGCCGAACAGCTGGCCCCCTGGCTGCTGG ACGCCGAGCTGGCCATCGAGTGGGTGGCGACGGCCGGGCGGCGGGCCGCGGCCCTGGGCGCCGAGTTACCCGAGGCCGCG CGCGCCGAATTGGTCTCGGCGCTAACCCAATTGGGCCGCGCGATCCGGTTGCCCGAACCGGGTGGCCTGCGCGACGCCGC CAGCCGAGCGCGCCGGCTGCTGGACGCGGCCACCGACGACCGGCCCGCCGGCACCGCGGTGCGCCGGCTGGCCCTGGCGA TCATCAACGCCGCGACGGCGACCGCCGACGTGCGGGCCATCGTCGACGGGGCCGCCGGCGCCGCGGTGCCCGACGTCGCC GGCAGCGAGCGCCCGCCGGCGGCCGCCGGCGCCGCGGCCGAGGAGCCCGCCGAGCAAGAAGAAGAACAACCGGCGGGTCT GCGGCCCACCACCCGGCAGGCCATCCAGGTGTCGGTGGCGGCGTCGCTGGCCATCATCACCGGCGAGCTGGTGTCGCCGG CCCGCTGGTATTGGGCCGTGATCGCCGCGTTCGTCATCTTCGCCGGCACCAACTCGTGGGGCGAAACCCTGACCAAGGGC TGGCAGCGGCTGCTCGGCACGATGCTCGGCGTGCCCGCCGGCGTGCTGGTGGCCACGCTGCTGACCGGACACGAGGCGGC CGCGCTGGCCGGCATCTTCGTGTGCCTGTTCTGTGCCTTCTATTTCATGACGGTGACCTACAGCCTGATGACGTTCTGGA TCACCACCATGCTGGCGCTGCTGTACGGGCTGCTCGGCCAGTTCTCGTTCGGGGTGCTGATGCTTCGCATCGAAGAGACT GCGCTCGGCGCGGTGATCGGTGCGACGGTGGCCGTCGTGGTGCTGCCGACCAACACCCGGACCGCGATCCGCGCCGACAC CCGGGCCTTTCTGACCAGCCTGTCCGCGCTGATCGAGGCCTGCGCGGCGGCCATGTCCGGCAGCGCGGCCAGCCCGTCCG AGCAGGCACGTCAGCTGGACCGCGACCTGCAGCAGTTCCGGGTGACCGCCAAGCCGCTGCTGGCCGGTGTCGCCGGGCTC GCAGGCCGCCGCGGCATCCGCCGCGCGCTGCGGATCTTCACCGCCTGCGACCGGTACGGCCGGGCGCTGGCGCGCAGCAG CGAGCAGTACCGCGGCTCGCCCGGGCCCGGCCCCCAACTGGCGCAAGCCTTTTCGGCGGCCGCGGCCCAGACGCGGCGCA ACCTCGACGCCTTGCTGGAGGCGATCGACAGTGGCCACCCGCCGACGTTGGTCTCGGCGGCCGACGAACTCGACGCCGCG GAAACCGCGGCCCGCCAGCACGACAGCGACGGTGACGGCGAGACACGGCCCGACGTCCGGCGATTCCTGACCGCCGTGCA CGCCCTGCGCCAGATCGAGCGGGCCGTCATCAGCACGGCCACCAATCTCGGTGGCCACGAAGACGTCAGGACAACCACCG CCGCGCCGCGCTGA
Upstream 100 bases:
>100_bases TAGCTTGGTCGCCGCCGCGCGGTTCGGGTAACCATGGGGGGTACGCGCAAGAGAGGCGGTCATCGGAATAACGGATCTCT ACGAACGCGCCCGCAACTGG
Downstream 100 bases:
>100_bases CGGACGGGGCCACGTTTGCCACCGGCGGGTTAGCCGGGCTGCGGGCTCGTCGCATCGCGGCGCTCATCGGTGGCGATGAA GTCCTCGATCAGCTCCACCA
Product: hypothetical protein
Products: NA
Alternate protein names: Fusaric Acid Resistance Protein Conserved Region; LOW QUALITY PROTEIN Integral Membrane Protein; Transmembrane Protein
Number of amino acids: Translated: 697; Mature: 697
Protein sequence:
>697_residues MIGSDPGLLRLRMATRTTAALGLSLLALWLLTRATGQPLTVALLGVVITMVASRSVNEPDPRQQRITMALLPVPAAVAIT AAAVLAPHPVAGDVVFVLIVFAAAYIRRFGARGRALGTVCTYVMTSHVLPDRPERVLRATIRALRARMAIVIDTTAEAVR TGRLDERRRRRMRARTIRLNETALMVQSQIEDRADPGTLWPGVTAEQLAPWLLDAELAIEWVATAGRRAAALGAELPEAA RAELVSALTQLGRAIRLPEPGGLRDAASRARRLLDAATDDRPAGTAVRRLALAIINAATATADVRAIVDGAAGAAVPDVA GSERPPAAAGAAAEEPAEQEEEQPAGLRPTTRQAIQVSVAASLAIITGELVSPARWYWAVIAAFVIFAGTNSWGETLTKG WQRLLGTMLGVPAGVLVATLLTGHEAAALAGIFVCLFCAFYFMTVTYSLMTFWITTMLALLYGLLGQFSFGVLMLRIEET ALGAVIGATVAVVVLPTNTRTAIRADTRAFLTSLSALIEACAAAMSGSAASPSEQARQLDRDLQQFRVTAKPLLAGVAGL AGRRGIRRALRIFTACDRYGRALARSSEQYRGSPGPGPQLAQAFSAAAAQTRRNLDALLEAIDSGHPPTLVSAADELDAA ETAARQHDSDGDGETRPDVRRFLTAVHALRQIERAVISTATNLGGHEDVRTTTAAPR
Sequences:
>Translated_697_residues MIGSDPGLLRLRMATRTTAALGLSLLALWLLTRATGQPLTVALLGVVITMVASRSVNEPDPRQQRITMALLPVPAAVAIT AAAVLAPHPVAGDVVFVLIVFAAAYIRRFGARGRALGTVCTYVMTSHVLPDRPERVLRATIRALRARMAIVIDTTAEAVR TGRLDERRRRRMRARTIRLNETALMVQSQIEDRADPGTLWPGVTAEQLAPWLLDAELAIEWVATAGRRAAALGAELPEAA RAELVSALTQLGRAIRLPEPGGLRDAASRARRLLDAATDDRPAGTAVRRLALAIINAATATADVRAIVDGAAGAAVPDVA GSERPPAAAGAAAEEPAEQEEEQPAGLRPTTRQAIQVSVAASLAIITGELVSPARWYWAVIAAFVIFAGTNSWGETLTKG WQRLLGTMLGVPAGVLVATLLTGHEAAALAGIFVCLFCAFYFMTVTYSLMTFWITTMLALLYGLLGQFSFGVLMLRIEET ALGAVIGATVAVVVLPTNTRTAIRADTRAFLTSLSALIEACAAAMSGSAASPSEQARQLDRDLQQFRVTAKPLLAGVAGL AGRRGIRRALRIFTACDRYGRALARSSEQYRGSPGPGPQLAQAFSAAAAQTRRNLDALLEAIDSGHPPTLVSAADELDAA ETAARQHDSDGDGETRPDVRRFLTAVHALRQIERAVISTATNLGGHEDVRTTTAAPR >Mature_697_residues MIGSDPGLLRLRMATRTTAALGLSLLALWLLTRATGQPLTVALLGVVITMVASRSVNEPDPRQQRITMALLPVPAAVAIT AAAVLAPHPVAGDVVFVLIVFAAAYIRRFGARGRALGTVCTYVMTSHVLPDRPERVLRATIRALRARMAIVIDTTAEAVR TGRLDERRRRRMRARTIRLNETALMVQSQIEDRADPGTLWPGVTAEQLAPWLLDAELAIEWVATAGRRAAALGAELPEAA RAELVSALTQLGRAIRLPEPGGLRDAASRARRLLDAATDDRPAGTAVRRLALAIINAATATADVRAIVDGAAGAAVPDVA GSERPPAAAGAAAEEPAEQEEEQPAGLRPTTRQAIQVSVAASLAIITGELVSPARWYWAVIAAFVIFAGTNSWGETLTKG WQRLLGTMLGVPAGVLVATLLTGHEAAALAGIFVCLFCAFYFMTVTYSLMTFWITTMLALLYGLLGQFSFGVLMLRIEET ALGAVIGATVAVVVLPTNTRTAIRADTRAFLTSLSALIEACAAAMSGSAASPSEQARQLDRDLQQFRVTAKPLLAGVAGL AGRRGIRRALRIFTACDRYGRALARSSEQYRGSPGPGPQLAQAFSAAAAQTRRNLDALLEAIDSGHPPTLVSAADELDAA ETAARQHDSDGDGETRPDVRRFLTAVHALRQIERAVISTATNLGGHEDVRTTTAAPR
Specific function: Unknown
COG id: COG1289
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73814; Mature: 73814
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGSDPGLLRLRMATRTTAALGLSLLALWLLTRATGQPLTVALLGVVITMVASRSVNEPD CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC PRQQRITMALLPVPAAVAITAAAVLAPHPVAGDVVFVLIVFAAAYIRRFGARGRALGTVC CHHHHEEHHEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH TYVMTSHVLPDRPERVLRATIRALRARMAIVIDTTAEAVRTGRLDERRRRRMRARTIRLN HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECHHHHHHHCCCHHHHHHHHHHHHHCCC ETALMVQSQIEDRADPGTLWPGVTAEQLAPWLLDAELAIEWVATAGRRAAALGAELPEAA HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHH RAELVSALTQLGRAIRLPEPGGLRDAASRARRLLDAATDDRPAGTAVRRLALAIINAATA HHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH TADVRAIVDGAAGAAVPDVAGSERPPAAAGAAAEEPAEQEEEQPAGLRPTTRQAIQVSVA HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHH ASLAIITGELVSPARWYWAVIAAFVIFAGTNSWGETLTKGWQRLLGTMLGVPAGVLVATL HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LTGHEAAALAGIFVCLFCAFYFMTVTYSLMTFWITTMLALLYGLLGQFSFGVLMLRIEET HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHH ALGAVIGATVAVVVLPTNTRTAIRADTRAFLTSLSALIEACAAAMSGSAASPSEQARQLD HHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH RDLQQFRVTAKPLLAGVAGLAGRRGIRRALRIFTACDRYGRALARSSEQYRGSPGPGPQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHH AQAFSAAAAQTRRNLDALLEAIDSGHPPTLVSAADELDAAETAARQHDSDGDGETRPDVR HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH RFLTAVHALRQIERAVISTATNLGGHEDVRTTTAAPR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MIGSDPGLLRLRMATRTTAALGLSLLALWLLTRATGQPLTVALLGVVITMVASRSVNEPD CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC PRQQRITMALLPVPAAVAITAAAVLAPHPVAGDVVFVLIVFAAAYIRRFGARGRALGTVC CHHHHEEHHEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH TYVMTSHVLPDRPERVLRATIRALRARMAIVIDTTAEAVRTGRLDERRRRRMRARTIRLN HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECHHHHHHHCCCHHHHHHHHHHHHHCCC ETALMVQSQIEDRADPGTLWPGVTAEQLAPWLLDAELAIEWVATAGRRAAALGAELPEAA HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHH RAELVSALTQLGRAIRLPEPGGLRDAASRARRLLDAATDDRPAGTAVRRLALAIINAATA HHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH TADVRAIVDGAAGAAVPDVAGSERPPAAAGAAAEEPAEQEEEQPAGLRPTTRQAIQVSVA HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHH ASLAIITGELVSPARWYWAVIAAFVIFAGTNSWGETLTKGWQRLLGTMLGVPAGVLVATL HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LTGHEAAALAGIFVCLFCAFYFMTVTYSLMTFWITTMLALLYGLLGQFSFGVLMLRIEET HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHH ALGAVIGATVAVVVLPTNTRTAIRADTRAFLTSLSALIEACAAAMSGSAASPSEQARQLD HHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH RDLQQFRVTAKPLLAGVAGLAGRRGIRRALRIFTACDRYGRALARSSEQYRGSPGPGPQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHH AQAFSAAAAQTRRNLDALLEAIDSGHPPTLVSAADELDAAETAARQHDSDGDGETRPDVR HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH RFLTAVHALRQIERAVISTATNLGGHEDVRTTTAAPR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA