Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
---|---|
Accession | NC_002944 |
Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is 41410167
Identifier: 41410167
GI number: 41410167
Start: 4533482
End: 4534360
Strand: Reverse
Name: 41410167
Synonym: MAP4069c
Alternate gene names: NA
Gene position: 4534360-4533482 (Counterclockwise)
Preceding gene: 41410168
Following gene: 41410166
Centisome position: 93.88
GC content: 68.94
Gene sequence:
>879_bases ATGTCCGAACCGGTTGCCCCCCGCGTGGCCGTCTACCTCGACTTCGACAACATCGTGATCTCCCGCTACGACCAGATTCA CGGCCGGAACTCGTTCCAGCGGGACAAGGCCAAGGGGCTCGAGCAGTTCACCGAGCGGCTCGAGCAGGCGACGGTCGACG TCGGCGCGATCCTGGATTTCGCGTCGTCGTTCGGCACGCTGGTGCTCACCCGCGCCTATGCCGACTGGTCGGCCGAGATC AACGCCGGGTATCGCGGCCAGTTGGTGGCCCGCGCGGTCGACCTGGTGCAGCTGTTCCCGGCCGCCGCCTACGGCAAGAA CGGCGCCGACATCCGGTTGGCCGTCGACGCAGTGGAGGACATGTTCCGGCTGCCCGACCTGACGCATGTGGTGATCGTCG CCGGCGACTCCGACTACATTCCGTTGGCCCAGCGCTGCAAGCGGCTGGGCCGGTACGTGGTCGGCATCGGGGTGGCCGGC GCGTCGAGCCGGGCGCTGGCGGCGGCGTGCGACGAGTTCGTCATCTACGACGCGCTGCCCGGGGTAACGGCGCTGGACCG CACCCCCGCGCCGGCCGAAACGGTGCCCGCCAAACCGCGCACCCGGCGCGGCAAGGCGGCCCAACCCGAGGAACCCGACC CGCAGGCCGCGGCCACCGCGCTGCTGACCCGCGCGCTGCAGATCGGTTTCGAGAAGGACGACGTCGACTGGCTGCACAAC TCGGCCGTCAAGGCCCAGATGAAGCGGATGGATCCGTCGTTCAGCGAAAAGTCTTTGGGTTTCCGCTCGTTCAGCGATTT CCTGCGGTCGCGCTCCGACGTCGTCGAGCTGGACGAGACGTCGACGACGCGGATGGTGCGGCTTCGCCCGCACGAGTGA
Upstream 100 bases:
>100_bases CGGAAGGCGACGCGGTCGCCGTGCAGTTCGAGAAACTTCAGCTCGCTCATGTGGCTCGGATACCCACCCGAGGCCGTCTA TCTCGGCAATGATCGAAGGC
Downstream 100 bases:
>100_bases ATTCGCCGCCCCGACCCATCCCGGCCGAACCCGGCCCGTCCCAGCCCATCCCGGCCCAATCCCGGCCATGCATTTTTCGT CTGGTGTATGGCGTTTCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MSEPVAPRVAVYLDFDNIVISRYDQIHGRNSFQRDKAKGLEQFTERLEQATVDVGAILDFASSFGTLVLTRAYADWSAEI NAGYRGQLVARAVDLVQLFPAAAYGKNGADIRLAVDAVEDMFRLPDLTHVVIVAGDSDYIPLAQRCKRLGRYVVGIGVAG ASSRALAAACDEFVIYDALPGVTALDRTPAPAETVPAKPRTRRGKAAQPEEPDPQAAATALLTRALQIGFEKDDVDWLHN SAVKAQMKRMDPSFSEKSLGFRSFSDFLRSRSDVVELDETSTTRMVRLRPHE
Sequences:
>Translated_292_residues MSEPVAPRVAVYLDFDNIVISRYDQIHGRNSFQRDKAKGLEQFTERLEQATVDVGAILDFASSFGTLVLTRAYADWSAEI NAGYRGQLVARAVDLVQLFPAAAYGKNGADIRLAVDAVEDMFRLPDLTHVVIVAGDSDYIPLAQRCKRLGRYVVGIGVAG ASSRALAAACDEFVIYDALPGVTALDRTPAPAETVPAKPRTRRGKAAQPEEPDPQAAATALLTRALQIGFEKDDVDWLHN SAVKAQMKRMDPSFSEKSLGFRSFSDFLRSRSDVVELDETSTTRMVRLRPHE >Mature_291_residues SEPVAPRVAVYLDFDNIVISRYDQIHGRNSFQRDKAKGLEQFTERLEQATVDVGAILDFASSFGTLVLTRAYADWSAEIN AGYRGQLVARAVDLVQLFPAAAYGKNGADIRLAVDAVEDMFRLPDLTHVVIVAGDSDYIPLAQRCKRLGRYVVGIGVAGA SSRALAAACDEFVIYDALPGVTALDRTPAPAETVPAKPRTRRGKAAQPEEPDPQAAATALLTRALQIGFEKDDVDWLHNS AVKAQMKRMDPSFSEKSLGFRSFSDFLRSRSDVVELDETSTTRMVRLRPHE
Specific function: Unknown
COG id: COG1432
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32061; Mature: 31929
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEPVAPRVAVYLDFDNIVISRYDQIHGRNSFQRDKAKGLEQFTERLEQATVDVGAILDF CCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASSFGTLVLTRAYADWSAEINAGYRGQLVARAVDLVQLFPAAAYGKNGADIRLAVDAVED HHHHHHEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHH MFRLPDLTHVVIVAGDSDYIPLAQRCKRLGRYVVGIGVAGASSRALAAACDEFVIYDALP HHHCCCCEEEEEEECCCCCCHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHEECCCC GVTALDRTPAPAETVPAKPRTRRGKAAQPEEPDPQAAATALLTRALQIGFEKDDVDWLHN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH SAVKAQMKRMDPSFSEKSLGFRSFSDFLRSRSDVVELDETSTTRMVRLRPHE HHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCEEEECCCCCEEEEEECCCC >Mature Secondary Structure SEPVAPRVAVYLDFDNIVISRYDQIHGRNSFQRDKAKGLEQFTERLEQATVDVGAILDF CCCCCCEEEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASSFGTLVLTRAYADWSAEINAGYRGQLVARAVDLVQLFPAAAYGKNGADIRLAVDAVED HHHHHHEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHH MFRLPDLTHVVIVAGDSDYIPLAQRCKRLGRYVVGIGVAGASSRALAAACDEFVIYDALP HHHCCCCEEEEEEECCCCCCHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHEECCCC GVTALDRTPAPAETVPAKPRTRRGKAAQPEEPDPQAAATALLTRALQIGFEKDDVDWLHN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH SAVKAQMKRMDPSFSEKSLGFRSFSDFLRSRSDVVELDETSTTRMVRLRPHE HHHHHHHHHCCCCCCHHHCCHHHHHHHHHCCCCEEEECCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA